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BaseInfo

ncRNA ID novel_gma_miR3825
Species Glycine max
Class miRNA
Genome position Chr9:32489762-32489850 [-]
Reference genome Glycine_max_v2.0
Source SRR1294485
Length 21
Mature sequence(if miRNA) 1 - CCUUAGGCAGAAUGAUGACCA - 21
Stem-loop(if miRNA) --    A      -C       ------           -CC    AUG
  GUUA UUAUUC  CUUAAGG      UAGUUGUCUGG   UGUU   U
  |||| ||||||  |||||||      |||||||||||   ||||
  CAGU AGUAAG  GGAUUCC      AUCAACAGACC   ACAA   A
AC    -      AC       UUUUGG           AAA    GAA
Stem-loop sequence GUUAAUUAUUCCCUUAAGGUAGUUGUCUGGCCUGUUAUGUAAAGAACAAAACCAGACAACUAGGUUUUCCUUAGGCAGAAUGAUGACCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003529422.3
ncRNA:21   ACCAGUAGUAAGACGGAUUCC   1
  ***|||*||||||||||||||
targets:534   ACUUCAGCAUUCUGCCUAAGG   554

2.0 PREDICTED: Glycine max ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like (LOC100818113), mRNA ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like(LOC100818113) coding protein psRNATarget
XM_014773104.1
ncRNA:21   ACCAGUAGUAAGACGGAUUCC   1
  |||||=|||||=|||||||||
targets:179   UGGUCGUCAUUUUGCCUAAGG   199

2.5 PREDICTED: Glycine max uncharacterized LOC102667191 (LOC102667191), partial mRNA uncharacterized LOC102667191(LOC102667191) coding protein psRNATarget
XM_006588116.1
ncRNA:21   ACCAGUAGUAAGACGGAUUCC   1
  |||||=|||||=|||||||||
targets:56   UGGUCGUCAUUUUGCCUAAGG   76

2.5 PREDICTED: Glycine max uncharacterized LOC102662614 (LOC102662614), mRNA uncharacterized LOC102662614(LOC102662614) coding protein psRNATarget
XM_006593076.1
ncRNA:21   ACCAGUAGUAAGACGGAUUCC   1
  |||||=|||||=|||||||||
targets:179   UGGUCGUCAUUUUGCCUAAGG   199

2.5 PREDICTED: Glycine max uncharacterized LOC102660366 (LOC102660366), mRNA uncharacterized LOC102660366(LOC102660366) coding protein psRNATarget
XM_014764183.1
ncRNA:21   ACCAGUAGUAAGACGGAUUCC   1
  |||||=|||||=|||||||||
targets:1455   UGGUCGUCAUUUUGCCUAAGG   1475

2.5 PREDICTED: Glycine max uncharacterized LOC102661716 (LOC102661716), transcript variant X2, mRNA uncharacterized LOC102661716(LOC102661716) coding protein psRNATarget
XM_006591223.2
ncRNA:21   ACCAGUAGUAAGACGGAUUCC   1
  |||||=|||||=|||||||||
targets:1419   UGGUCGUCAUUUUGCCUAAGG   1439

2.5 PREDICTED: Glycine max uncharacterized LOC102661716 (LOC102661716), transcript variant X3, mRNA uncharacterized LOC102661716(LOC102661716) coding protein psRNATarget
XM_014764182.1
ncRNA:21   ACCAGUAGUAAGACGGAUUCC   1
  |||||=|||||=|||||||||
targets:1455   UGGUCGUCAUUUUGCCUAAGG   1475

2.5 PREDICTED: Glycine max uncharacterized LOC102661716 (LOC102661716), transcript variant X1, mRNA uncharacterized LOC102661716(LOC102661716) coding protein psRNATarget
XM_014779275.1
ncRNA:21   ACCAGUAGUAAGACGGAUUCC   1
  |||||=|||||=|||||||||
targets:2016   UGGUCGUCAUUUUGCCUAAGG   2036

2.5 PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X7, mRNA uncharacterized LOC100792767(LOC100792767) coding protein psRNATarget
AB934276.1
ncRNA:21   ACCAGUAGUAAGACGGAUUCC   1
  |||||=|||||=|||||||||
targets:1981   UGGUCGUCAUUUUGCCUAAGG   2001

2.5 Glycine max GmTNP3a mRNA for transposase, complete cds, strain: L72-2040 NA coding protein psRNATarget
AB934277.1
ncRNA:21   ACCAGUAGUAAGACGGAUUCC   1
  |||||=|||||=|||||||||
targets:1978   UGGUCGUCAUUUUGCCUAAGG   1998

2.5 Glycine max GmTNP3b mRNA for transposase, complete cds, strain: L72-2040 NA coding protein psRNATarget
XM_014779274.1
ncRNA:21   ACCAGUAGUAAGACGGAUUCC   1
  |||||=|||||=|||||||||
targets:2016   UGGUCGUCAUUUUGCCUAAGG   2036

2.5 PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X6, mRNA uncharacterized LOC100792767(LOC100792767) coding protein psRNATarget
XM_014779273.1
ncRNA:21   ACCAGUAGUAAGACGGAUUCC   1
  |||||=|||||=|||||||||
targets:1969   UGGUCGUCAUUUUGCCUAAGG   1989

2.5 PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X5, mRNA uncharacterized LOC100792767(LOC100792767) coding protein psRNATarget
XM_014779270.1
ncRNA:21   ACCAGUAGUAAGACGGAUUCC   1
  |||||=|||||=|||||||||
targets:2016   UGGUCGUCAUUUUGCCUAAGG   2036

2.5 PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X2, mRNA uncharacterized LOC100792767(LOC100792767) coding protein psRNATarget
XM_014779271.1
ncRNA:21   ACCAGUAGUAAGACGGAUUCC   1
  |||||=|||||=|||||||||
targets:2137   UGGUCGUCAUUUUGCCUAAGG   2157

2.5 PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X3, mRNA uncharacterized LOC100792767(LOC100792767) coding protein psRNATarget
XM_014763083.1
ncRNA:21   ACCAGUAGUAAGACGGAUUCC   1
  |||||=|||||=|||||||||
targets:3527   UGGUCGUCAUUUUGCCUAAGG   3547

2.5 PREDICTED: Glycine max uncharacterized LOC106794966 (LOC106794966), transcript variant X2, mRNA uncharacterized LOC106794966(LOC106794966) coding protein psRNATarget
XM_014779272.1
ncRNA:21   ACCAGUAGUAAGACGGAUUCC   1
  |||||=|||||=|||||||||
targets:3159   UGGUCGUCAUUUUGCCUAAGG   3179

2.5 PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X4, mRNA uncharacterized LOC100792767(LOC100792767) coding protein psRNATarget
AB934278.1
ncRNA:21   ACCAGUAGUAAGACGGAUUCC   1
  |||||=|||||=|||||||||
targets:3970   UGGUCGUCAUUUUGCCUAAGG   3990

2.5 Glycine max GmTNP4a mRNA for transposase, complete cds, strain: L72-2040 NA coding protein psRNATarget
AB934279.1
ncRNA:21   ACCAGUAGUAAGACGGAUUCC   1
  |||||=|||||=|||||||||
targets:3970   UGGUCGUCAUUUUGCCUAAGG   3990

2.5 Glycine max GmTNP4b mRNA for transposase, complete cds, strain: L72-2040 NA coding protein psRNATarget
XM_014770450.1
ncRNA:21   ACCAGUAGUAAGACGGAUUCC   1
  |||||=|||||||*|||||||
targets:779   UGGUCGUCAUUCUACCUAAGG   799

2.5 PREDICTED: Glycine max uncharacterized LOC106796841 (LOC106796841), mRNA uncharacterized LOC106796841(LOC106796841) coding protein psRNATarget
XM_014767501.1
ncRNA:21   ACCAGUAGUAAGACGGAUUCC   1
  |||||=|||||||*|||||||
targets:1037   UGGUCGUCAUUCUACCUAAGG   1057

2.5 PREDICTED: Glycine max uncharacterized LOC106796055 (LOC106796055), partial mRNA uncharacterized LOC106796055(LOC106796055) coding protein psRNATarget
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