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BaseInfo

ncRNA ID	novel_gma_miR3819
Species	Glycine max
Class	miRNA
Genome position	Chr19:36614591-36614721 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451676
Length	20
Mature sequence(if miRNA)	1 - UGAAAAAAAUUACACAACAG - 20
Stem-loop(if miRNA)	--        U     --GGGGUA       UGCAAAAC                ------      GCG   GUUGUGUA UUUUU        AAAAAAU        GAAAUUAUGAUUUUGU      AUUUUU   G   |||||||| |||||        |||||||        ||||||||||||||||      ||||||   CAACACAU AAAAA        UUUUUUA        CUUUAAUACUAAGACA      UAAAAA   G GA        U     AAGUGGGG       -UAUAUUA                AUACAU      AGU
Stem-loop sequence	GUUGUGUAUUUUUUGGGGUAAAAAAAUUGCAAAACGAAAUUAUGAUUUUGUAUUUUUGCGGGUGAAAAAAUUACAUAACAGAAUCAUAAUUUCAUUAUAUAUUUUUUGGGGUGAAAAAAAUUACACAACAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK245284.1	ncRNA:20   GACAACACAUUAAAAAAAGU   1   *|*|||*||||||||||||| targets:1359   GUUUUGGGUAAUUUUUUUCA   1378 Target Full Sequence	2.0	Glycine max cDNA, clone: GMFL01-25-P20	NA	coding protein	psRNATarget
BT098479.1	ncRNA:20   GACAACACAUUAAAAAAAGU   1   =||*|||||*|||||||||| targets:615   UUGGUGUGUCAUUUUUUUCA   634 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-23M15 unknown mRNA	NA	coding protein	psRNATarget
XM_006580096.2	ncRNA:20   GACAACACAUUAAAAAAAGU   1   =||||*||||*||||||||| targets:1564   UUGUUAUGUAUUUUUUUUCA   1583 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100785473 (LOC100785473), transcript variant X3, mRNA	uncharacterized LOC100785473(LOC100785473)	coding protein	psRNATarget
XM_003524907.3	ncRNA:20   GACAACACAUUAAAAAAAGU   1   =||||*||||*||||||||| targets:1728   UUGUUAUGUAUUUUUUUUCA   1747 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100785473 (LOC100785473), transcript variant X1, mRNA	uncharacterized LOC100785473(LOC100785473)	coding protein	psRNATarget
XM_006580095.2	ncRNA:20   GACAACACAUUAAAAAAAGU   1   =||||*||||*||||||||| targets:1966   UUGUUAUGUAUUUUUUUUCA   1985 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100785473 (LOC100785473), transcript variant X2, mRNA	uncharacterized LOC100785473(LOC100785473)	coding protein	psRNATarget
XM_006581069.2	ncRNA:20   GAC-AACACAUUAAAAAAAGU   1   *||-||||||||||||||||* targets:3436   AUGAUUGUGUAAUUUUUUUCU   3456 Target Full Sequence	3.0	PREDICTED: Glycine max glutamate receptor 3.3-like (LOC100777478), transcript variant X2, mRNA	glutamate receptor 3.3-like(LOC100777478)	coding protein	psRNATarget
XM_003527245.3	ncRNA:20   GAC-AACACAUUAAAAAAAGU   1   *||-||||||||||||||||* targets:3487   AUGAUUGUGUAAUUUUUUUCU   3507 Target Full Sequence	3.0	PREDICTED: Glycine max glutamate receptor 3.3-like (LOC100777478), transcript variant X1, mRNA	glutamate receptor 3.3-like(LOC100777478)	coding protein	psRNATarget
XM_006581070.2	ncRNA:20   GAC-AACACAUUAAAAAAAGU   1   *||-||||||||||||||||* targets:3569   AUGAUUGUGUAAUUUUUUUCU   3589 Target Full Sequence	3.0	PREDICTED: Glycine max glutamate receptor 3.3-like (LOC100777478), transcript variant X3, mRNA	glutamate receptor 3.3-like(LOC100777478)	coding protein	psRNATarget
XM_003552108.3	ncRNA:20   GACAACACAUUAAAAAAAGU   1   |*|||*|||||||||||||* targets:1758   CAGUUAUGUAAUUUUUUUCC   1777 Target Full Sequence	3.0	PREDICTED: Glycine max putative E3 ubiquitin-protein ligase XBAT31 (LOC100811410), mRNA	putative E3 ubiquitin-protein ligase XBAT31(LOC100811410)	coding protein	psRNATarget
XM_014772303.1	ncRNA:20   GACAACACAUUAAAAAAAGU   1   **|*|||||||||||||||* targets:164   GGGAUGUGUAAUUUUUUUCU   183 Target Full Sequence	3.0	PREDICTED: Glycine max putative ubiquitin-like-specific protease 1B (LOC100790059), transcript variant X2, mRNA	putative ubiquitin-like-specific protease 1B(LOC100790059)	coding protein	psRNATarget