ncRNA ID | novel_gma_miR3810 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr18:6317930-6318048 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451676 |
Length | 20 |
Mature sequence(if miRNA) | 100 - CCGGUAGAACAAAUUGUUCA - 119 |
Stem-loop(if miRNA) |
--CC          A      AU UG              C                 A     GGUAGAACAA UUGUUC  C  GAAGAACCUUCUUC GGAGAAGUUAUCGGAAG A     |||||||||| ||||||  |  |||||||||||||| ||||||||||||||||| C     CCAUCUUGUU AAUAAG  G  CUUCUUGGAAGAAG CCUCUUCGAUAGCCUUC U AAGA          A      AU GU              A                 U |
Stem-loop sequence | CCGGUAGAACAAAUUGUUCAUCUGGAAGAACCUUCUUCCGGAGAAGUUAUCGGAAGAACUUCUUCCGAUAGCUUCUCCAGAAGAAGGUUCUUCUGGUAGAAUAAAUUGUUCUACCAGAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_014778747.1 |
|
2.5 | PREDICTED: Glycine max probable starch synthase 4, chloroplastic/amyloplastic (LOC100804775), transcript variant X2, mRNA | probable starch synthase 4, chloroplastic/amyloplastic(LOC100804775) | coding protein | psRNATarget | |||||||||
XM_003531032.3 |
|
2.5 | PREDICTED: Glycine max probable starch synthase 4, chloroplastic/amyloplastic (LOC100804775), transcript variant X1, mRNA | probable starch synthase 4, chloroplastic/amyloplastic(LOC100804775) | coding protein | psRNATarget |