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BaseInfo

ncRNA ID novel_gma_miR3810
Species Glycine max
Class miRNA
Genome position Chr18:6317930-6318048 [-]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 100 - CCGGUAGAACAAAUUGUUCA - 119
Stem-loop(if miRNA) --CC          A      AU UG              C                 A
    GGUAGAACAA UUGUUC  C  GAAGAACCUUCUUC GGAGAAGUUAUCGGAAG A
    |||||||||| ||||||  |  |||||||||||||| ||||||||||||||||| C
    CCAUCUUGUU AAUAAG  G  CUUCUUGGAAGAAG CCUCUUCGAUAGCCUUC U
AAGA          A      AU GU              A                 U
Stem-loop sequence CCGGUAGAACAAAUUGUUCAUCUGGAAGAACCUUCUUCCGGAGAAGUUAUCGGAAGAACUUCUUCCGAUAGCUUCUCCAGAAGAAGGUUCUUCUGGUAGAAUAAAUUGUUCUACCAGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014778747.1
ncRNA:20   ACUUGUUAAACAAGAUGGCC   1
  *|=||||||||||||||=||
targets:2614   AGGACAAUUUGUUCUACUGG   2633

2.5 PREDICTED: Glycine max probable starch synthase 4, chloroplastic/amyloplastic (LOC100804775), transcript variant X2, mRNA probable starch synthase 4, chloroplastic/amyloplastic(LOC100804775) coding protein psRNATarget
XM_003531032.3
ncRNA:20   ACUUGUUAAACAAGAUGGCC   1
  *|=||||||||||||||=||
targets:2679   AGGACAAUUUGUUCUACUGG   2698

2.5 PREDICTED: Glycine max probable starch synthase 4, chloroplastic/amyloplastic (LOC100804775), transcript variant X1, mRNA probable starch synthase 4, chloroplastic/amyloplastic(LOC100804775) coding protein psRNATarget