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BaseInfo

ncRNA ID novel_gma_miR3809
Species Glycine max
Class miRNA
Genome position Chr18:8409244-8409285 [-]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 1 - GUUAUUGUUGUAUUUUGAUC - 20
Stem-loop(if miRNA) ---UUU    G     -   UU
      AAUG GAUAA AAU  U
      |||| ||||| |||
      UUAU UUGUU UUG  G
CUAGUU    G     A   UU
Stem-loop sequence UUUAAUGGGAUAAAAUUUUGUUGUUAUUGUUGUAUUUUGAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003520081.3
ncRNA:20   CUAGUUUUAUGUUGUUAUUG   1
  *|*||||=||||||||||||
targets:1022   CAGCAAAGUACAACAAUAAC   1041

2.5 PREDICTED: Glycine max protein BIG GRAIN 1-like E (LOC100775233), mRNA protein BIG GRAIN 1-like E(LOC100775233) coding protein psRNATarget
XM_003543350.3
ncRNA:20   CUAGUUUUAUGUUGUUAUUG   1
  *||*=||||||||||||||*
targets:1947   AAUGGAAAUACAACAAUAAA   1966

3.0 PREDICTED: Glycine max fasciclin-like arabinogalactan protein 15 (LOC100815434), transcript variant X1, mRNA fasciclin-like arabinogalactan protein 15(LOC100815434) coding protein psRNATarget