Search result

BaseInfo

ncRNA ID	novel_gma_miR3808
Species	Glycine max
Class	miRNA
Genome position	Chr18:9083005-9083181 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451676
Length	20
Mature sequence(if miRNA)	158 - ACAAAAUUUAGAUACAGUUU - 177
Stem-loop(if miRNA)	--          G   C     ----CA        ------U                                A      AAUG     AAG   ACAAAAUUUA AUA AGUUU      UAGGUGUU       UUUUUUUUCAAUUAGAGUUGGAGUUUUACCUU GUAAUC    UAAUA   G   |||||||||| ||| |||||      ||||||||       |||||||||||||||||||||||||||||||| ||||||    |||||   UGUUUUGAAU UAU UCAAG      AUCCACAA       GAAAAGAGGUUAAUUUUAACCUCAAAGUGGAA UAUUAG    AUUAU   U CC          A   A     AAAGAA        CAAACAU                                C      -AAA     GUU
Stem-loop sequence	ACAAAAUUUAGAUACAGUUUCAUAGGUGUUUUUUUUUUUCAAUUAGAGUUGGAGUUUUACCUUAGUAAUCAAUGUAAUAAAGGUUUGUAUUAAAAGAUUAUCAAGGUGAAACUCCAAUUUUAAUUGGAGAAAAGUACAAACAACACCUAAAGAAAGAACUAUAUAUAAGUUUUGUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003519237.3	ncRNA:20   UUUGACAUAGAUUUAAAACA   1   |||||||||||||||||||| targets:1825   AAACUGUAUCUAAAUUUUGU   1844 Target Full Sequence	0.0	PREDICTED: Glycine max tyrosine--tRNA ligase, chloroplastic/mitochondrial-like (LOC100813016), mRNA	tyrosine--tRNA ligase, chloroplastic/mitochondrial-like(LOC100813016)	coding protein	psRNATarget
JN201532.1	ncRNA:20   UUUGACAUAGAUUUAAAACA   1   ||||||*||||||||||||| targets:266   AAACUGCAUCUAAAUUUUGU   285 Target Full Sequence	1.0	Glycine max clone Gm4-2 mRNA sequence	NA	coding protein	psRNATarget
XM_003540810.3	ncRNA:20   UUUGACAUAGAUUUAAAACA   1   =||||||||||||=|||||| targets:3324   GAACUGUAUCUAAGUUUUGU   3343 Target Full Sequence	1.5	PREDICTED: Glycine max formin-like protein 3 (LOC100816477), mRNA	formin-like protein 3(LOC100816477)	coding protein	psRNATarget
XM_014776818.1	ncRNA:20   UUUGACAUAGAUUUAAAACA   1   =||||||||||||=|||||| targets:3435   GAACUGUAUCUAAGUUUUGU   3454 Target Full Sequence	1.5	PREDICTED: Glycine max formin-like protein 3 (LOC100780844), mRNA	formin-like protein 3(LOC100780844)	coding protein	psRNATarget
XM_003553310.3	ncRNA:20   UUUGACAUAGAUUUAAAACA   1   *||||||||||||=|||||| targets:2090   UAACUGUAUCUAAGUUUUGU   2109 Target Full Sequence	1.5	PREDICTED: Glycine max probable arabinosyltransferase ARAD1 (LOC100793373), mRNA	probable arabinosyltransferase ARAD1(LOC100793373)	coding protein	psRNATarget
BT095284.1	ncRNA:20   UUUGACAUAGAUUUAAAACA   1   ||||||||||||||*||||| targets:125   AAACUGUAUCUAAACUUUGU   144 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-19A22 unknown mRNA	NA	coding protein	psRNATarget
XM_003534311.3	ncRNA:20   UUUGACAUAGAUUUAAAACA   1   |||||||||||||||*|||| targets:2065   AAACUGUAUCUAAAUCUUGU   2084 Target Full Sequence	1.5	PREDICTED: Glycine max amidophosphoribosyltransferase, chloroplastic-like (LOC100791919), mRNA	amidophosphoribosyltransferase, chloroplastic-like(LOC100791919)	coding protein	psRNATarget
XM_003544783.3	ncRNA:20   UUUGACAUAGAUUUAAAACA   1   *||||||||*|||||||||| targets:1136   UAACUGUAUAUAAAUUUUGU   1155 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100808486 (LOC100808486), mRNA	uncharacterized LOC100808486(LOC100808486)	coding protein	psRNATarget
XM_003519154.3	ncRNA:20   UUUGACAUAGAUUUAAAACA   1   *||||||||*|||||||||| targets:1129   UAACUGUAUAUAAAUUUUGU   1148 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100812670 (LOC100812670), mRNA	uncharacterized LOC100812670(LOC100812670)	coding protein	psRNATarget
BT095961.1	ncRNA:20   UUUGACAUAGAUUUAAAACA   1   ||||||*||||||=|||||| targets:634   AAACUGCAUCUAAGUUUUGU   653 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-15G2 unknown mRNA	NA	coding protein	psRNATarget
XM_003522635.3	ncRNA:20   UUUGACAUAGAUUUAAAACA   1   ||||||*||||||=|||||| targets:721   AAACUGCAUCUAAGUUUUGU   740 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100798503 (LOC100798503), mRNA	uncharacterized LOC100798503(LOC100798503)	coding protein	psRNATarget
XM_006585935.2	ncRNA:20   UUUGACAUAGAUUUAAAACA   1   =|||||*||||||=|||||| targets:359   GAACUGGAUCUAAGUUUUGU   378 Target Full Sequence	2.5	PREDICTED: Glycine max mucin-21-like (LOC100790656), transcript variant X3, mRNA	mucin-21-like(LOC100790656)	coding protein	psRNATarget
XM_006585934.2	ncRNA:20   UUUGACAUAGAUUUAAAACA   1   =|||||*||||||=|||||| targets:359   GAACUGGAUCUAAGUUUUGU   378 Target Full Sequence	2.5	PREDICTED: Glycine max mucin-21-like (LOC100790656), transcript variant X2, mRNA	mucin-21-like(LOC100790656)	coding protein	psRNATarget
BT098239.1	ncRNA:20   UUUGACAUAGAUUUAAAACA   1   ||||||*||||||||||*|| targets:298   AAACUGCAUCUAAAUUUCGU   317 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-12O15 unknown mRNA	NA	coding protein	psRNATarget
JN201531.1	ncRNA:20   UUUGACAUAGAUUUAAAACA   1   ||||||*||||||||||*|| targets:316   AAACUGCAUCUAAAUUUCGU   335 Target Full Sequence	2.5	Glycine max clone Gm4-1 mRNA sequence	NA	coding protein	psRNATarget