ncRNA ID | novel_gma_miR3807 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr18:12245470-12245664 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451676 |
Length | 19 |
Mature sequence(if miRNA) | 177 - AAACACUUCUAGAAGAAAA - 195 |
Stem-loop(if miRNA) |
--        C   A   A           U               AUC      C            A   ---------------------A  AACUUCAACUUU   AAACACUU UAG AGA AAAAAUAAGAA GUAAAAUGAAUUAAG   CUCCCA AAGUUAAAAUCA CUU                      UG            U   |||||||| ||| ||| ||||||||||| |||||||||||||||   |||||| |||||||||||| |||                      ||   UUUGUGAA AUC UCU UUUUUAUUCUU UAUUUUACUUAAUUU   GAGGGU UUCAAUUUUAGU GAA                      AA            A UA        U   C   C           C               GAA      A            C   AACCUCUUCAAUUUACUCUCUC  AGUUAUUUUCUA |
Stem-loop sequence | AAACACUUCUAGAAGAAAAAAAUAAGAAUGUAAAAUGAAUUAAGAUCCUCCCACAAGUUAAAAUCAACUUAUGAACUUCAACUUUUAAUCUUUUAUUGAAACUCUCUCAUUUAACUUCUCCAAAAGCUGAUUUUAACUUAUGGGAGAAGUUUAAUUCAUUUUAUCUUCUUAUUUUUCUCUCCUAUAAGUGUUUAU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK245831.1 |
|
2.5 | Glycine max cDNA, clone: GMFL01-42-K05 | NA | coding protein | psRNATarget | |||||||||
XM_003532009.3 |
|
2.5 | PREDICTED: Glycine max probable membrane-associated kinase regulator 6 (LOC100792951), mRNA | probable membrane-associated kinase regulator 6(LOC100792951) | coding protein | psRNATarget |