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BaseInfo

ncRNA ID novel_gma_miR3807
Species Glycine max
Class miRNA
Genome position Chr18:12245470-12245664 [-]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 19
Mature sequence(if miRNA) 177 - AAACACUUCUAGAAGAAAA - 195
Stem-loop(if miRNA) --        C   A   A           U               AUC      C            A   ---------------------A  AACUUCAACUUU
  AAACACUU UAG AGA AAAAAUAAGAA GUAAAAUGAAUUAAG   CUCCCA AAGUUAAAAUCA CUU                      UG            U
  |||||||| ||| ||| ||||||||||| |||||||||||||||   |||||| |||||||||||| |||                      ||
  UUUGUGAA AUC UCU UUUUUAUUCUU UAUUUUACUUAAUUU   GAGGGU UUCAAUUUUAGU GAA                      AA            A
UA        U   C   C           C               GAA      A            C   AACCUCUUCAAUUUACUCUCUC  AGUUAUUUUCUA
Stem-loop sequence AAACACUUCUAGAAGAAAAAAAUAAGAAUGUAAAAUGAAUUAAGAUCCUCCCACAAGUUAAAAUCAACUUAUGAACUUCAACUUUUAAUCUUUUAUUGAAACUCUCUCAUUUAACUUCUCCAAAAGCUGAUUUUAACUUAUGGGAGAAGUUUAAUUCAUUUUAUCUUCUUAUUUUUCUCUCCUAUAAGUGUUUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK245831.1
ncRNA:19   AAAAGAAGAUCUUCACAAA   1
  *||||||||||||*|||||
targets:242   GUUUCUUCUAGAAAUGUUU   260

2.5 Glycine max cDNA, clone: GMFL01-42-K05 NA coding protein psRNATarget
XM_003532009.3
ncRNA:19   AAAAGAAGAUCUUCACAAA   1
  *||||||||||||*|||||
targets:360   GUUUCUUCUAGAAAUGUUU   378

2.5 PREDICTED: Glycine max probable membrane-associated kinase regulator 6 (LOC100792951), mRNA probable membrane-associated kinase regulator 6(LOC100792951) coding protein psRNATarget