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BaseInfo

ncRNA ID novel_gma_miR3803
Species Glycine max
Class miRNA
Genome position Chr10:45549875-45549996 [+]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 1 - CCGGUAGAACAAAUUGUUCA - 20
Stem-loop(if miRNA) --            A      AU                 ---C                 A
  CCGGUAGAACAA UUGUUC  CCAGAAGAACCUUCUUC    GGAGAAGUUACCGGAAG A
  |||||||||||| ||||||  |||||||||||||||||    ||||||||||||||||| C
  GGCUAUCUUGUU AAUAAG  GGUCUUCUUGGAAGAAG    CUUCUUCGAUGGCCUUC U
AA            A      AU                 AAGA                 U
Stem-loop sequence CCGGUAGAACAAAUUGUUCAUCCAGAAGAACCUUCUUCCGGAGAAGUUACCGGAAGAACUUCUUCCGGUAGCUUCUUCAGAAGAAGAAGGUUCUUCUGGUAGAAUAAAUUGUUCUAUCGGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014778747.1
ncRNA:20   ACUUGUUAAACAAGAUGGCC   1
  *|=||||||||||||||=||
targets:2614   AGGACAAUUUGUUCUACUGG   2633

2.5 PREDICTED: Glycine max probable starch synthase 4, chloroplastic/amyloplastic (LOC100804775), transcript variant X2, mRNA probable starch synthase 4, chloroplastic/amyloplastic(LOC100804775) coding protein psRNATarget
XM_003531032.3
ncRNA:20   ACUUGUUAAACAAGAUGGCC   1
  *|=||||||||||||||=||
targets:2679   AGGACAAUUUGUUCUACUGG   2698

2.5 PREDICTED: Glycine max probable starch synthase 4, chloroplastic/amyloplastic (LOC100804775), transcript variant X1, mRNA probable starch synthase 4, chloroplastic/amyloplastic(LOC100804775) coding protein psRNATarget