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BaseInfo

ncRNA ID novel_gma_miR3801
Species Glycine max
Class miRNA
Genome position Chr18:46812552-46812662 [-]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 92 - AGCAAGUUGGUGUCCACAGG - 111
Stem-loop(if miRNA) A    -       -    -  G     -----    -    --A      ----UU   G  
 GCAA GUUGGUG UCCA CA GAGCA     AGUG UUGA   CCAUCC      GGU GAU
 |||| ||||||| |||| || |||||     |||| ||||   ||||||      ||| ||U
 UGUU UAACCAU AGGU GU UUUGU     UCAC AACU   GGUAGG      UCA UUC
-    G       G    C  A     GAAAG    C    CAA      UGUUAU   G  
Stem-loop sequence AGCAAGUUGGUGUCCACAGGAGCAAGUGUUGAACCAUCCUUGGUGGAUUCUUGACUUAUUGUGGAUGGAACUCAACCACUGAAAGUGUUUAUGCUGGAGUACCAAUGUUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT099198.1
ncRNA:20   GGACACCUGUGGUUGAACGA   1
  |||||||||||||=||||||
targets:457   CCUGUGGACACCAGCUUGCU   476

1.5 Soybean clone JCVI-FLGm-26J8 unknown mRNA NA coding protein psRNATarget