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BaseInfo

ncRNA ID novel_gma_miR3797
Species Glycine max
Class miRNA
Genome position Chr18:55036014-55036094 [-]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 62 - UUGGUUAUAGACAAAAUGAA - 81
Stem-loop(if miRNA) --U                  AG   AUG   -    C  UC
   UGGUUAUAGACAAAAUGA  UUU   UUG GAGU GU  U
   ||||||||||||||||||  |||   ||| |||| ||
   ACCAAUAUCUGUUUUACU  AAA   AAC CUUA CA  A
GGC                  AA   --A   U    U  UC
Stem-loop sequence UUGGUUAUAGACAAAAUGAAGUUUAUGUUGGAGUCGUUCUACUACUAUUCUCAAAAAAAAUCAUUUUGUCUAUAACCACGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003552514.3
ncRNA:20   AAGUAAAACAGAUAUUGGUU   1
  *||||||||||||||||||*
targets:1804   AUCAUUUUGUCUAUAACCAC   1823

1.0 PREDICTED: Glycine max UDP-glycosyltransferase 83A1-like (LOC100805563), mRNA UDP-glycosyltransferase 83A1-like(LOC100805563) coding protein psRNATarget
XM_003546387.3
ncRNA:20   AAGUAAAACAGAUAUUGGUU   1
  *|=|||*||||||||||||=
targets:1769   AUUAUUCUGUCUAUAACCAG   1788

3.0 PREDICTED: Glycine max DNA ligase 4 (LOC100816002), mRNA DNA ligase 4(LOC100816002) coding protein psRNATarget