Search result

BaseInfo

ncRNA ID novel_gma_miR3791
Species Glycine max
Class miRNA
Genome position Chr10:44269458-44269607 [+]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 131 - UUUUCUUGGAAUUCUUUUCA - 150
Stem-loop(if miRNA) --      -  G   U               A  GG U      AUG   G  AA  A  G ---    U    G UCU
  GGAAGA UU UAA GAGAAGUGAGGAAAA AA  G AGACAU   CAG UC  AA GG U   AGGG CUUA G   A
  |||||| || ||| ||||||||||||||| ||  | ||||||   ||| ||  || || |   |||| |||| |   G
  UUUUCU AA GUU CUUUUUAUUUUUUUU UU  C UCUGUG   GUU AG  UU CU G   UCCC GGAU U   U
AC      U  G   -               G  GG -      ---   G  GA  A  G AAU    U    G UAA
Stem-loop sequence GGAAGAUUGUAAUGAGAAGUGAGGAAAAAAAGGGUAGACAUAUGCAGGUCAAAAAGGGUAGGGUCUUAGGUCUAGUAAUUGUAGGUCCCUUAAGGUCAUUAGGAGUUGGUGUCUCGGUUGUUUUUUUUAUUUUUCUUGGAAUUCUUUUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006587640.2
ncRNA:20   ACUUUUCUUAAGGUUCUUUU   1
  *|||||||||||||||||||
targets:149   AGAAAAGAAUUCCAAGAAAA   168

0.0 PREDICTED: Glycine max leucine-rich repeat receptor-like protein kinase TDR (LOC100813189), mRNA leucine-rich repeat receptor-like protein kinase TDR(LOC100813189) coding protein psRNATarget
XM_003539620.3
ncRNA:20   ACUUUUCUUAAGGUUCUUUU   1
  *|||||||||||||||||||
targets:147   AGAAAAGAAUUCCAAGAAAA   166

0.0 PREDICTED: Glycine max leucine-rich repeat receptor-like protein kinase TDR (LOC100809695), mRNA leucine-rich repeat receptor-like protein kinase TDR(LOC100809695) coding protein psRNATarget
XM_014772704.1
ncRNA:20   ACUUUUCUUAAGGUUCUUUU   1
  *||||||||*||||||||||
targets:1668   GGAAAAGAAGUCCAAGAAAA   1687

1.5 PREDICTED: Glycine max MATH domain-containing protein At5g43560-like (LOC100818052), transcript variant X3, mRNA MATH domain-containing protein At5g43560-like(LOC100818052) coding protein psRNATarget
XM_006589242.2
ncRNA:20   ACUUUUCUUAAGGUUCUUUU   1
  *||||||||*||||||||||
targets:2016   GGAAAAGAAGUCCAAGAAAA   2035

1.5 PREDICTED: Glycine max MATH domain-containing protein At5g43560-like (LOC100799509), transcript variant X6, mRNA MATH domain-containing protein At5g43560-like(LOC100799509) coding protein psRNATarget
XM_014772703.1
ncRNA:20   ACUUUUCUUAAGGUUCUUUU   1
  *||||||||*||||||||||
targets:1560   GGAAAAGAAGUCCAAGAAAA   1579

1.5 PREDICTED: Glycine max MATH domain-containing protein At5g43560-like (LOC100818052), transcript variant X2, mRNA MATH domain-containing protein At5g43560-like(LOC100818052) coding protein psRNATarget
XM_014772702.1
ncRNA:20   ACUUUUCUUAAGGUUCUUUU   1
  *||||||||*||||||||||
targets:1619   GGAAAAGAAGUCCAAGAAAA   1638

1.5 PREDICTED: Glycine max MATH domain-containing protein At5g43560-like (LOC100818052), transcript variant X1, mRNA MATH domain-containing protein At5g43560-like(LOC100818052) coding protein psRNATarget
XM_006589239.2
ncRNA:20   ACUUUUCUUAAGGUUCUUUU   1
  *||||||||*||||||||||
targets:1524   GGAAAAGAAGUCCAAGAAAA   1543

1.5 PREDICTED: Glycine max MATH domain-containing protein At5g43560-like (LOC100799509), transcript variant X3, mRNA MATH domain-containing protein At5g43560-like(LOC100799509) coding protein psRNATarget
XM_006589240.2
ncRNA:20   ACUUUUCUUAAGGUUCUUUU   1
  *||||||||*||||||||||
targets:1554   GGAAAAGAAGUCCAAGAAAA   1573

1.5 PREDICTED: Glycine max MATH domain-containing protein At5g43560-like (LOC100799509), transcript variant X4, mRNA MATH domain-containing protein At5g43560-like(LOC100799509) coding protein psRNATarget
XM_006589241.2
ncRNA:20   ACUUUUCUUAAGGUUCUUUU   1
  *||||||||*||||||||||
targets:1856   GGAAAAGAAGUCCAAGAAAA   1875

1.5 PREDICTED: Glycine max MATH domain-containing protein At5g43560-like (LOC100799509), transcript variant X5, mRNA MATH domain-containing protein At5g43560-like(LOC100799509) coding protein psRNATarget
XM_006589238.2
ncRNA:20   ACUUUUCUUAAGGUUCUUUU   1
  *||||||||*||||||||||
targets:2006   GGAAAAGAAGUCCAAGAAAA   2025

1.5 PREDICTED: Glycine max MATH domain-containing protein At5g43560-like (LOC100799509), transcript variant X2, mRNA MATH domain-containing protein At5g43560-like(LOC100799509) coding protein psRNATarget
XM_006589237.2
ncRNA:20   ACUUUUCUUAAGGUUCUUUU   1
  *||||||||*||||||||||
targets:2014   GGAAAAGAAGUCCAAGAAAA   2033

1.5 PREDICTED: Glycine max MATH domain-containing protein At5g43560-like (LOC100799509), transcript variant X1, mRNA MATH domain-containing protein At5g43560-like(LOC100799509) coding protein psRNATarget
AK285202.1
ncRNA:20   ACUUUUCUUAAGGUUCUUUU   1
  *||||||||||=|||||||=
targets:644   CGAAAAGAAUUUCAAGAAAG   663

2.5 Glycine max cDNA, clone: GMFL01-04-J04 NA coding protein psRNATarget
XM_003526732.2
ncRNA:20   ACUUUUCUUAAGGUUCUUUU   1
  *||||||||||=|||||||=
targets:687   CGAAAAGAAUUUCAAGAAAG   706

2.5 PREDICTED: Glycine max mitochondrial import inner membrane translocase subunit TIM22 (LOC100813121), mRNA mitochondrial import inner membrane translocase subunit TIM22(LOC100813121) coding protein psRNATarget
XM_003523253.3
ncRNA:20   ACUUUUCUUAAGGUUCUUUU   1
  *||||||||||=|||||||=
targets:738   CGAAAAGAAUUUCAAGAAAG   757

2.5 PREDICTED: Glycine max mitochondrial import inner membrane translocase subunit TIM22-like (LOC100775460), mRNA mitochondrial import inner membrane translocase subunit TIM22-like(LOC100775460) coding protein psRNATarget
KT726857.1
ncRNA:20   ACUUUUCUUAAGGUUCUUUU   1
  *||=|||=||||||||||||
targets:723   GGAGAAGGAUUCCAAGAAAA   742

2.5 Glycine max heat shock protein 90-1 mRNA, complete cds NA coding protein psRNATarget
NM_001317687.1
ncRNA:20   ACUUUUCUUAAGGUUCUUUU   1
  *||=|||=||||||||||||
targets:723   GGAGAAGGAUUCCAAGAAAA   742

2.5 Glycine max heat shock protein 83 (LOC100811234), mRNA heat shock protein 83(LOC100811234) coding protein psRNATarget
AK246110.1
ncRNA:20   ACUUUUCUUAAGGUUCUUUU   1
  *||=|||=||||||||||||
targets:803   GGAGAAGGAUUCCAAGAAAA   822

2.5 Glycine max cDNA, clone: GMFL01-52-C15 NA coding protein psRNATarget
XM_006599486.2
ncRNA:20   ACUUUUCUUAAGGUUCUUUU   1
  *||=|||=||||||||||||
targets:930   GGAGAAGGAUUCCAAGAAAA   949

2.5 PREDICTED: Glycine max heat shock protein 83-like (LOC100784477), mRNA heat shock protein 83-like(LOC100784477) coding protein psRNATarget
XM_003530743.3
ncRNA:20   ACUUUUCUUAAGGUUCUUUU   1
  *|=||||||*||||||||||
targets:87   AGGAAAGAAAUCCAAGAAAA   106

2.5 PREDICTED: Glycine max cytochrome P450 71D9-like (LOC100778040), mRNA cytochrome P450 71D9-like(LOC100778040) coding protein psRNATarget
BT099226.1
ncRNA:20   ACUU-UUCUUAAGGUUCUUUU   1
  ||||-||*|||||||||||||
targets:184   UGAAGAAUAAUUCCAAGAAAA   204

3.0 Soybean clone JCVI-FLGm-23B10 unknown mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.