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BaseInfo

ncRNA ID	novel_gma_miR3790
Species	Glycine max
Class	miRNA
Genome position	Chr17:9957302-9957386 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451676
Length	20
Mature sequence(if miRNA)	66 - UUGAAAACUGAGAAGAAAAC - 85
Stem-loop(if miRNA)	-UG    -    AG C        C  CCCCC    -    CUU    UUCU CUCA  U UCAACUCC AC     CUCU UUGA   U    |||| ||||  | |||||||| ||     |||| ||||    AAGA GAGU  A AGUUGAGG UG     GAGA GACU   U CAA    A    CA A        U  --UUC    A    AUC
Stem-loop sequence	UGUUCUCUCAAGUCUCAACUCCCACCCCCCCUCUUUGACUUUUCUAUCAGAAGAGCUUGUUGGAGUUGAAAACUGAGAAGAAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003544879.3	ncRNA:20   CAAAAGAAGAGUCAAAAGUU   1   *|||||||=||||||||||* targets:53   CUUUUCUUUUCAGUUUUCAU   72 Target Full Sequence	2.5	PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 11 (LOC100815088), mRNA	CBL-interacting serine/threonine-protein kinase 11(LOC100815088)	coding protein	psRNATarget
AK287089.1	ncRNA:20   CAAAAGAAGAGUCAAAAGUU   1   *|||||||=||||||||||* targets:23   CUUUUCUUUUCAGUUUUCAU   42 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-43-O04	NA	coding protein	psRNATarget
XM_003533800.3	ncRNA:20   CAAAAGAAGAGUCAAAAGUU   1   |||||||||||||||*|||* targets:52   GUUUUCUUCUCAGUUCUCAC   71 Target Full Sequence	2.5	PREDICTED: Glycine max putative uncharacterized protein DDB_G0270496 (LOC100787681), mRNA	putative uncharacterized protein DDB_G0270496(LOC100787681)	coding protein	psRNATarget
BT093284.1	ncRNA:20   CAAAAGAAGAGUCAAAAGUU   1   |||||||||||||||*|||* targets:48   GUUUUCUUCUCAGUUCUCAC   67 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-14C19 unknown mRNA	NA	coding protein	psRNATarget
XM_003533868.3	ncRNA:20   CAAAAGAAGAGUCAAAAGUU   1   **||||||||||*||||||| targets:2119   CAUUUCUUCUCACUUUUCAA   2138 Target Full Sequence	2.5	PREDICTED: Glycine max probable protein phosphatase 2C 43 (LOC100778238), transcript variant X1, mRNA	probable protein phosphatase 2C 43(LOC100778238)	coding protein	psRNATarget
XM_014762091.1	ncRNA:20   CAAAAGAAGAGUCAAAAGUU   1   **||||||||||*||||||| targets:1248   CAUUUCUUCUCACUUUUCAA   1267 Target Full Sequence	2.5	PREDICTED: Glycine max probable protein phosphatase 2C 43 (LOC100778238), transcript variant X2, mRNA	probable protein phosphatase 2C 43(LOC100778238)	coding protein	psRNATarget
XM_006586150.2	ncRNA:20   CAAAAGAAGAGUCAAAAGUU   1   ***||=|||||||||||||| targets:827   ACAUUUUUCUCAGUUUUCAA   846 Target Full Sequence	3.0	PREDICTED: Glycine max signal recognition particle 9 kDa protein-like (LOC100811012), transcript variant X2, mRNA	signal recognition particle 9 kDa protein-like(LOC100811012)	coding protein	psRNATarget
XM_003532207.3	ncRNA:20   CAAAAGAAGAGUCAAAAGUU   1   ***||=|||||||||||||| targets:738   ACAUUUUUCUCAGUUUUCAA   757 Target Full Sequence	3.0	PREDICTED: Glycine max signal recognition particle 9 kDa protein-like (LOC100811012), transcript variant X1, mRNA	signal recognition particle 9 kDa protein-like(LOC100811012)	coding protein	psRNATarget