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BaseInfo

ncRNA ID	novel_gma_miR3786
Species	Glycine max
Class	miRNA
Genome position	Chr17:155165-155327 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451676
Length	20
Mature sequence(if miRNA)	1 - CUAAAAACAAAAAAAUAAUU - 20
Stem-loop(if miRNA)	--A               C  U    CA      --- UA     A     A       A        A      A    GAAU    UGUUUUUUUGUUUUU GU CUUG  AAAUUA   U  UUUUU UUUUU GUCCUUA AACACUUU GAUAAC UUUU    A    ||||||||||||||| || ||||  ||||||   |  ||||| ||||| ||||||| |||||||| |||||| ||||    AUAAAAAAACAAAAA CA GAAC  UUUAAU   A  AAAAA AAAAA CGGGAAU UUGUGAAA CUAUUG AAAA    G UUA               U  -    -A      ACA GC     A     G       A        A      A    AAGU
Stem-loop sequence	AUGUUUUUUUGUUUUUCGUUCUUGCAAAAUUAUUAUUUUUAUUUUUAGUCCUUAAAACACUUUAGAUAACAUUUUGAAUAGUGAAAAAAAGUUAUCAAAAGUGUUAUAAGGGCGAAAAAAAAAAACGAACAUAAUUUACAAGACUAAAAACAAAAAAAUAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT090928.1	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   =|||*||||||||||||||* targets:548   GAUUUUUUUUUUGUUUUUAU   567 Target Full Sequence	2.0	Soybean clone JCVI-FLGm-5P9 unknown mRNA	NA	coding protein	psRNATarget
NM_001248145.1	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   =|||*||||||||||||||* targets:548   GAUUUUUUUUUUGUUUUUAU   567 Target Full Sequence	2.0	Glycine max uncharacterized LOC100306696 (LOC100306696), mRNA	uncharacterized LOC100306696(LOC100306696)	coding protein	psRNATarget
XM_003531042.3	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   *|||||*||||||||||||* targets:841   UAUUAUAUUUUUGUUUUUAU   860 Target Full Sequence	2.0	PREDICTED: Glycine max high mobility group B protein 14-like (LOC100809401), mRNA	high mobility group B protein 14-like(LOC100809401)	coding protein	psRNATarget
XM_003553408.3	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   =|||=|||||||||||||=| targets:2269   GAUUGUUUUUUUGUUUUUGG   2288 Target Full Sequence	2.5	PREDICTED: Glycine max protein trichome birefringence-like 10 (LOC100779356), transcript variant X1, mRNA	protein trichome birefringence-like 10(LOC100779356)	coding protein	psRNATarget
XM_014768274.1	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   =|||||||||||||||||** targets:938   GAUUAUUUUUUUGUUUUUCC   957 Target Full Sequence	2.5	PREDICTED: Glycine max diphthine methyltransferase homolog (LOC100803883), transcript variant X8, mRNA	diphthine methyltransferase homolog(LOC100803883)	coding protein	psRNATarget
XM_014768272.1	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   =|||||||||||||||||** targets:848   GAUUAUUUUUUUGUUUUUCC   867 Target Full Sequence	2.5	PREDICTED: Glycine max diphthine methyltransferase homolog (LOC100803883), transcript variant X6, mRNA	diphthine methyltransferase homolog(LOC100803883)	coding protein	psRNATarget
XM_014768273.1	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   =|||||||||||||||||** targets:599   GAUUAUUUUUUUGUUUUUCC   618 Target Full Sequence	2.5	PREDICTED: Glycine max diphthine methyltransferase homolog (LOC100803883), transcript variant X7, mRNA	diphthine methyltransferase homolog(LOC100803883)	coding protein	psRNATarget
XM_014768271.1	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   =|||||||||||||||||** targets:509   GAUUAUUUUUUUGUUUUUCC   528 Target Full Sequence	2.5	PREDICTED: Glycine max diphthine methyltransferase homolog (LOC100803883), transcript variant X5, mRNA	diphthine methyltransferase homolog(LOC100803883)	coding protein	psRNATarget
XM_006597954.2	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   =|||||||||||||||||** targets:324   GAUUAUUUUUUUGUUUUUCC   343 Target Full Sequence	2.5	PREDICTED: Glycine max diphthine methyltransferase homolog (LOC100803883), transcript variant X2, mRNA	diphthine methyltransferase homolog(LOC100803883)	coding protein	psRNATarget
XM_006597955.2	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   =|||||||||||||||||** targets:296   GAUUAUUUUUUUGUUUUUCC   315 Target Full Sequence	2.5	PREDICTED: Glycine max diphthine methyltransferase homolog (LOC100803883), transcript variant X4, mRNA	diphthine methyltransferase homolog(LOC100803883)	coding protein	psRNATarget
XM_006597956.2	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   =|||||||||||||||||** targets:234   GAUUAUUUUUUUGUUUUUCC   253 Target Full Sequence	2.5	PREDICTED: Glycine max diphthine methyltransferase homolog (LOC100803883), transcript variant X1, mRNA	diphthine methyltransferase homolog(LOC100803883)	coding protein	psRNATarget
XM_006597957.2	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   =|||||||||||||||||** targets:206   GAUUAUUUUUUUGUUUUUCC   225 Target Full Sequence	2.5	PREDICTED: Glycine max diphthine methyltransferase homolog (LOC100803883), transcript variant X3, mRNA	diphthine methyltransferase homolog(LOC100803883)	coding protein	psRNATarget
XM_003523832.2	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   ||||||||*||||||||||* targets:1754   AAUUAUUUAUUUGUUUUUAA   1773 Target Full Sequence	2.5	PREDICTED: Glycine max pectinesterase-like (LOC100806133), mRNA	pectinesterase-like(LOC100806133)	coding protein	psRNATarget
XM_014765395.1	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   |||||||||||||||*|||* targets:965   AAUUAUUUUUUUGUUAUUAU   984 Target Full Sequence	2.5	PREDICTED: Glycine max solute carrier family 35 member E3-like (LOC102669184), mRNA	solute carrier family 35 member E3-like(LOC102669184)	coding protein	psRNATarget
XM_003548281.3	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   *|||*|||||||||||||=| targets:1705   CAUUUUUUUUUUGUUUUUGG   1724 Target Full Sequence	2.5	PREDICTED: Glycine max serine/threonine-protein kinase STN8, chloroplastic-like (LOC100788727), transcript variant X1, mRNA	serine/threonine-protein kinase STN8, chloroplastic-like(LOC100788727)	coding protein	psRNATarget
XM_014773690.1	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   *||||||||||||*|||||* targets:634   UAUUAUUUUUUUGGUUUUAA   653 Target Full Sequence	2.5	PREDICTED: Glycine max serine/threonine-protein kinase D6PK (LOC100792314), transcript variant X2, mRNA	serine/threonine-protein kinase D6PK(LOC100792314)	coding protein	psRNATarget
XM_006576656.2	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   *||||||||||||*|||||* targets:634   UAUUAUUUUUUUGGUUUUAA   653 Target Full Sequence	2.5	PREDICTED: Glycine max serine/threonine-protein kinase D6PK (LOC100792314), transcript variant X1, mRNA	serine/threonine-protein kinase D6PK(LOC100792314)	coding protein	psRNATarget
XM_003519332.3	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   **||||||||||*||||||| targets:1686   UCUUAUUUUUUUUUUUUUAG   1705 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized acetyltransferase At3g50280 (LOC100500612), mRNA	uncharacterized acetyltransferase At3g50280(LOC100500612)	coding protein	psRNATarget
BT096572.1	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   *|||||||||||*||||||* targets:1362   UAUUAUUUUUUUUUUUUUAC   1381 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-20J16 unknown mRNA	NA	coding protein	psRNATarget
NM_001255796.1	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   *|||||||||||*||||||* targets:1362   UAUUAUUUUUUUUUUUUUAC   1381 Target Full Sequence	2.5	Glycine max rho GTPase-activating protein gacP-like (LOC100802256), mRNA	rho GTPase-activating protein gacP-like(LOC100802256)	coding protein	psRNATarget
XM_003526099.3	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   **|||||||||||||||*|| targets:1022   UUUUAUUUUUUUGUUUUAAG   1041 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear nucleic acid-binding protein C1D (LOC100795174), mRNA	nuclear nucleic acid-binding protein C1D(LOC100795174)	coding protein	psRNATarget
XM_014763891.1	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   =|||*|||||||||||||*| targets:575   GAUUCUUUUUUUGUUUUUUG   594 Target Full Sequence	2.5	PREDICTED: Glycine max kinesin-like protein NACK2 (LOC100802226), transcript variant X3, mRNA	kinesin-like protein NACK2(LOC100802226)	coding protein	psRNATarget
XM_003538825.3	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   =|||*|||||||||||||*| targets:575   GAUUCUUUUUUUGUUUUUUG   594 Target Full Sequence	2.5	PREDICTED: Glycine max kinesin-like protein NACK2 (LOC100802226), transcript variant X2, mRNA	kinesin-like protein NACK2(LOC100802226)	coding protein	psRNATarget
XM_003532731.3	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   |=||*||||||||||||||* targets:1729   AGUUUUUUUUUUGUUUUUAC   1748 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100801788 (LOC100801788), mRNA	uncharacterized LOC100801788(LOC100801788)	coding protein	psRNATarget
XM_003543539.3	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   **||=||||||||||||||* targets:1074   UUUUGUUUUUUUGUUUUUAU   1093 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100781380 (LOC100781380), mRNA	uncharacterized LOC100781380(LOC100781380)	coding protein	psRNATarget
XM_014770407.1	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   ==|*|||||||||||||||* targets:2928   GGUGAUUUUUUUGUUUUUAA   2947 Target Full Sequence	3.0	PREDICTED: Glycine max receptor-like protein kinase FERONIA (LOC100806251), mRNA	receptor-like protein kinase FERONIA(LOC100806251)	coding protein	psRNATarget
XM_003538483.3	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   ==||*||||||||||||||* targets:2191   GGUUCUUUUUUUGUUUUUAA   2210 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g14190, chloroplastic-like (LOC100789335), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At4g14190, chloroplastic-like(LOC100789335)	coding protein	psRNATarget
XM_014767997.1	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   ==||*||||||||||||||* targets:82   GGUUUUUUUUUUGUUUUUAA   101 Target Full Sequence	3.0	PREDICTED: Glycine max 60S ribosomal protein L18a-like protein (LOC102662831), mRNA	60S ribosomal protein L18a-like protein(LOC102662831)	coding protein	psRNATarget
XM_006595141.2	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   |=||**|||||||||||||| targets:3728   AGUUUAUUUUUUGUUUUUAG   3747 Target Full Sequence	3.0	PREDICTED: Glycine max U-box domain-containing protein 34-like (LOC100818435), transcript variant X1, mRNA	U-box domain-containing protein 34-like(LOC100818435)	coding protein	psRNATarget
XM_014766150.1	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   |=||**|||||||||||||| targets:3606   AGUUUAUUUUUUGUUUUUAG   3625 Target Full Sequence	3.0	PREDICTED: Glycine max U-box domain-containing protein 34-like (LOC100818435), transcript variant X2, mRNA	U-box domain-containing protein 34-like(LOC100818435)	coding protein	psRNATarget
XM_014766151.1	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   |=||**|||||||||||||| targets:3533   AGUUUAUUUUUUGUUUUUAG   3552 Target Full Sequence	3.0	PREDICTED: Glycine max U-box domain-containing protein 34-like (LOC100818435), transcript variant X3, mRNA	U-box domain-containing protein 34-like(LOC100818435)	coding protein	psRNATarget
XM_014766152.1	ncRNA:20   UUAAUAAAAAAACAAAAAUC   1   |=||**|||||||||||||| targets:3344   AGUUUAUUUUUUGUUUUUAG   3363 Target Full Sequence	3.0	PREDICTED: Glycine max U-box domain-containing protein 34-like (LOC100818435), transcript variant X4, mRNA	U-box domain-containing protein 34-like(LOC100818435)	coding protein	psRNATarget