Search result

BaseInfo

ncRNA ID novel_gma_miR3771
Species Glycine max
Class miRNA
Genome position Chr16:31351756-31351852 [+]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 78 - UGAAAAUAAAAAUAGAAAAC - 97
Stem-loop(if miRNA) --          C              ------      AUAA    G   A
  UUUUUAUUUU AUUUUUAUUGAAAA      CAGAAA    UAAU AAA U
  |||||||||| ||||||||||||||      ||||||    |||| ||| G
  AAAGAUAAAA UAAAAGUGAUUUUU      GUCUUU    GUUA UUU U
CA          A              AUAAAA      --AG    G   G
Stem-loop sequence UUUUUAUUUUCAUUUUUAUUGAAAACAGAAAAUAAUAAUGAAAAUGUGUUUGAUUGGAUUUCUGAAAAUAUUUUUAGUGAAAAUAAAAAUAGAAAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006586924.2
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *||||=||||||||||||||
targets:3692   CUUUUUUAUUUUUAUUUUCA   3711

1.0 PREDICTED: Glycine max villin-4-like (LOC100809968), mRNA villin-4-like(LOC100809968) coding protein psRNATarget
XM_003545041.3
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *||||||*||||||||||||
targets:5   UUUUUCUUUUUUUAUUUUCA   24

1.5 PREDICTED: Glycine max uncharacterized membrane protein At1g06890-like (LOC100814737), transcript variant X1, mRNA uncharacterized membrane protein At1g06890-like(LOC100814737) coding protein psRNATarget
XM_003526425.3
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *||||||*||||||||||||
targets:37   CUUUUCUUUUUUUAUUUUCA   56

1.5 PREDICTED: Glycine max signal peptide peptidase-like (LOC100784956), transcript variant X1, mRNA signal peptide peptidase-like(LOC100784956) coding protein psRNATarget
XM_003539710.3
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  |*|||=||||||||||||||
targets:2303   GAUUUUUAUUUUUAUUUUCA   2322

2.0 PREDICTED: Glycine max exocyst complex component EXO70B1-like (LOC100810579), mRNA exocyst complex component EXO70B1-like(LOC100810579) coding protein psRNATarget
XM_003526388.3
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  **|||=||||||||||||||
targets:3612   UCUUUUUAUUUUUAUUUUCA   3631

2.0 PREDICTED: Glycine max death-inducer obliterator 1-like (LOC100808809), transcript variant X2, mRNA death-inducer obliterator 1-like(LOC100808809) coding protein psRNATarget
XM_014776212.1
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  **|||=||||||||||||||
targets:3591   UCUUUUUAUUUUUAUUUUCA   3610

2.0 PREDICTED: Glycine max death-inducer obliterator 1-like (LOC100808809), transcript variant X1, mRNA death-inducer obliterator 1-like(LOC100808809) coding protein psRNATarget
XM_006578479.2
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *||||=|||||||||||||*
targets:74   AUUUUUUAUUUUUAUUUUCU   93

2.0 PREDICTED: Glycine max uncharacterized LOC100792679 (LOC100792679), transcript variant X1, mRNA uncharacterized LOC100792679(LOC100792679) coding protein psRNATarget
XM_006578480.2
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *||||=|||||||||||||*
targets:74   AUUUUUUAUUUUUAUUUUCU   93

2.0 PREDICTED: Glycine max uncharacterized LOC100792679 (LOC100792679), transcript variant X2, mRNA uncharacterized LOC100792679(LOC100792679) coding protein psRNATarget
XM_003518507.3
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *||||=|||||||||||||*
targets:155   AUUUUUUAUUUUUAUUUUCC   174

2.0 PREDICTED: Glycine max protein S-acyltransferase 8-like (LOC100818705), mRNA protein S-acyltransferase 8-like(LOC100818705) coding protein psRNATarget
XM_006592349.2
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *||||=|||||||||||||*
targets:1841   AUUUUUUAUUUUUAUUUUCU   1860

2.0 PREDICTED: Glycine max QWRF motif-containing protein 3-like (LOC102660157), mRNA QWRF motif-containing protein 3-like(LOC102660157) coding protein psRNATarget
AK245290.1
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *||||=|||||||||||||*
targets:645   UUUUUUUAUUUUUAUUUUCU   664

2.0 Glycine max cDNA, clone: GMFL01-26-E01 NA coding protein psRNATarget
DQ787058.1
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *||||=|||||||||||||*
targets:296   UUUUUUUAUUUUUAUUUUCU   315

2.0 Glycine max bZIP transcription factor bZIP126 (bZIP126) mRNA, complete cds NA coding protein psRNATarget
XM_006585376.2
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  **|||=||||||||||||||
targets:117   UAUUUUUAUUUUUAUUUUCA   136

2.0 PREDICTED: Glycine max CST complex subunit STN1-like (LOC100778207), transcript variant X5, mRNA CST complex subunit STN1-like(LOC100778207) coding protein psRNATarget
XM_014764836.1
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *||||=|||||||||||||*
targets:1060   CUUUUUUAUUUUUAUUUUCU   1079

2.0 PREDICTED: Glycine max uncharacterized LOC100794794 (LOC100794794), mRNA uncharacterized LOC100794794(LOC100794794) coding protein psRNATarget
XM_014779060.1
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  **|||=||||||||||||||
targets:1002   UAUUUUUAUUUUUAUUUUCA   1021

2.0 PREDICTED: Glycine max CST complex subunit STN1-like (LOC100778207), transcript variant X1, mRNA CST complex subunit STN1-like(LOC100778207) coding protein psRNATarget
XM_006585377.2
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  **|||=||||||||||||||
targets:986   UAUUUUUAUUUUUAUUUUCA   1005

2.0 PREDICTED: Glycine max CST complex subunit STN1-like (LOC100778207), transcript variant X2, mRNA CST complex subunit STN1-like(LOC100778207) coding protein psRNATarget
XM_003532907.3
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  **|||=||||||||||||||
targets:958   UAUUUUUAUUUUUAUUUUCA   977

2.0 PREDICTED: Glycine max CST complex subunit STN1-like (LOC100778207), transcript variant X3, mRNA CST complex subunit STN1-like(LOC100778207) coding protein psRNATarget
XM_003529828.3
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  |||||=||||||||||||=|
targets:554   GUUUUUUAUUUUUAUUUUUA   573

2.5 PREDICTED: Glycine max RNA-binding protein 24-B-like (LOC100786208), mRNA RNA-binding protein 24-B-like(LOC100786208) coding protein psRNATarget
XM_006585280.2
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  |||||=||||||||||||=|
targets:441   GUUUUUUAUUUUUAUUUUUA   460

2.5 PREDICTED: Glycine max protein LIM1-like (LOC102662037), mRNA protein LIM1-like(LOC102662037) coding protein psRNATarget
XM_006575222.2
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *||||=||||||||||||=|
targets:6900   UUUUUUUAUUUUUAUUUUUA   6919

2.5 PREDICTED: Glycine max uncharacterized LOC100793152 (LOC100793152), mRNA uncharacterized LOC100793152(LOC100793152) coding protein psRNATarget
XM_014773386.1
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *||||=||||||||||||=|
targets:3026   AUUUUUUAUUUUUAUUUUUA   3045

2.5 PREDICTED: Glycine max beta-1,3-galactosyltransferase 15-like (LOC100780913), transcript variant X3, mRNA beta-1,3-galactosyltransferase 15-like(LOC100780913) coding protein psRNATarget
XM_006573047.2
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *||||=||||||||||||=|
targets:3004   AUUUUUUAUUUUUAUUUUUA   3023

2.5 PREDICTED: Glycine max beta-1,3-galactosyltransferase 15-like (LOC100780913), transcript variant X2, mRNA beta-1,3-galactosyltransferase 15-like(LOC100780913) coding protein psRNATarget
XM_003517945.3
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *||||=||||||||||||=|
targets:2810   AUUUUUUAUUUUUAUUUUUA   2829

2.5 PREDICTED: Glycine max beta-1,3-galactosyltransferase 15-like (LOC100780913), transcript variant X1, mRNA beta-1,3-galactosyltransferase 15-like(LOC100780913) coding protein psRNATarget
XM_003550740.3
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *||||=||||||||||||=|
targets:170   CUUUUUUAUUUUUAUUUUUA   189

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g66520-like (LOC100813379), mRNA pentatricopeptide repeat-containing protein At5g66520-like(LOC100813379) coding protein psRNATarget
XM_006602077.2
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *|||||||||||||||||==
targets:406   UUUUUCUAUUUUUAUUUUUG   425

2.5 PREDICTED: Glycine max probable purine permease 9 (LOC100789651), transcript variant X3, mRNA probable purine permease 9(LOC100789651) coding protein psRNATarget
XM_014776234.1
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *|||||||||||||||||==
targets:1583   UUUUUCUAUUUUUAUUUUUG   1602

2.5 PREDICTED: Glycine max 26S proteasome non-ATPase regulatory subunit 11 homolog (LOC100780845), mRNA 26S proteasome non-ATPase regulatory subunit 11 homolog(LOC100780845) coding protein psRNATarget
BT096703.1
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *|||||||||||||||||==
targets:1454   UUUUUCUAUUUUUAUUUUUG   1473

2.5 Soybean clone JCVI-FLGm-25B16 unknown mRNA NA coding protein psRNATarget
XM_003549556.3
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *||||=||||||||||||=|
targets:1481   CUUUUUUAUUUUUAUUUUUA   1500

2.5 PREDICTED: Glycine max probable polyamine aminopropyl transferase (LOC100819757), mRNA probable polyamine aminopropyl transferase(LOC100819757) coding protein psRNATarget
XM_003537418.3
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  |||||=||||||||||||*|
targets:99   GUUUUUUAUUUUUAUUUUAA   118

2.5 PREDICTED: Glycine max ARF guanine-nucleotide exchange factor GNOM-like (LOC100789674), mRNA ARF guanine-nucleotide exchange factor GNOM-like(LOC100789674) coding protein psRNATarget
XM_003530089.3
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *||||=||||||||||||=|
targets:769   UUUUUUUAUUUUUAUUUUUA   788

2.5 PREDICTED: Glycine max uncharacterized LOC100799612 (LOC100799612), mRNA uncharacterized LOC100799612(LOC100799612) coding protein psRNATarget
XM_006603006.2
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  ||||*|||||||||||||=|
targets:69   GUUUGCUAUUUUUAUUUUUA   88

2.5 PREDICTED: Glycine max uncharacterized LOC100819962 (LOC100819962), mRNA uncharacterized LOC100819962(LOC100819962) coding protein psRNATarget
XM_003555241.3
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  **||||||||||||||||=|
targets:93   UAUUUCUAUUUUUAUUUUUA   112

2.5 PREDICTED: Glycine max QWRF motif-containing protein 2 (LOC100815206), mRNA QWRF motif-containing protein 2(LOC100815206) coding protein psRNATarget
XM_014767404.1
ncRNA:20   CAAA--AGAUAAAAAUAAAAGU   1
  *|||--||||||||||||||||
targets:1644   AUUUACUCUAUUUUUAUUUUCA   1665

2.5 PREDICTED: Glycine max zinc finger CCCH domain-containing protein 32-like (LOC100812475), transcript variant X4, mRNA zinc finger CCCH domain-containing protein 32-like(LOC100812475) coding protein psRNATarget
XM_014767410.1
ncRNA:20   CAAA--AGAUAAAAAUAAAAGU   1
  *|||--||||||||||||||||
targets:1479   AUUUACUCUAUUUUUAUUUUCA   1500

2.5 PREDICTED: Glycine max zinc finger CCCH domain-containing protein 32-like (LOC100812475), transcript variant X7, mRNA zinc finger CCCH domain-containing protein 32-like(LOC100812475) coding protein psRNATarget
XM_003542466.3
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *|||||||||||||||||=*
targets:159   CUUUUCUAUUUUUAUUUUUC   178

2.5 PREDICTED: Glycine max probable E3 ubiquitin-protein ligase LOG2 (LOC100789032), mRNA probable E3 ubiquitin-protein ligase LOG2(LOC100789032) coding protein psRNATarget
XM_003526297.3
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *|||||||||||||||||=*
targets:1515   UUUUUCUAUUUUUAUUUUUU   1534

2.5 PREDICTED: Glycine max WAT1-related protein At5g07050-like (LOC100799947), mRNA WAT1-related protein At5g07050-like(LOC100799947) coding protein psRNATarget
XM_003523876.2
ncRNA:20   CAAAAGAUAAAAAUAAAAGU   1
  *|||||||||||||||||=*
targets:1466   CUUUUCUAUUUUUAUUUUUU   1485

2.5 PREDICTED: Glycine max WAT1-related protein At5g07050-like (LOC100804359), mRNA WAT1-related protein At5g07050-like(LOC100804359) coding protein psRNATarget
XM_014764270.1
ncRNA:20   CAAA-AGAUAAAAAUAAAAGU   1
  *|||-|=||||||||||||||
targets:1752   AUUUAUUUAUUUUUAUUUUCA   1772

3.0 PREDICTED: Glycine max regulator of G-protein signaling 1-like (LOC100813598), transcript variant X2, mRNA regulator of G-protein signaling 1-like(LOC100813598) coding protein psRNATarget
XM_003538529.3
ncRNA:20   CAAA-AGAUAAAAAUAAAAGU   1
  *|||-|=||||||||||||||
targets:1747   AUUUAUUUAUUUUUAUUUUCA   1767

3.0 PREDICTED: Glycine max regulator of G-protein signaling 1-like (LOC100813598), transcript variant X1, mRNA regulator of G-protein signaling 1-like(LOC100813598) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.