| ncRNA ID | ath-miR408-3p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr2:19319814-19320031 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 120 - AUGCACUGCCUCUUCCCUGGC - 140 |
| Stem-loop(if miRNA) |
AAG AUU UU --GAAGAC --G U --- -------------------------- CAA A AUU UUUAC UUAA GUUAG GGUA GCAAUGAAA AAAGC G AAUGA GAGAGAGA CAGGGAA GCAG GCAUGG GAG UAAAACA A ||||| |||| ||||||||| ||||| | ||||| |||||||| ||||||| |||| |||||| ||| ||||||| C CAAUC UCAU CGUUAUUUU UUUCG C UUACU CUCUCUCU GUCCCUU CGUC CGUACC CUC GUUUUGU G --G --G -- AAGGUAAC ACA U UUC CUUUAUAUCUCUUUUUUUCUCCCUCG CUC A CAU ----U CUCA |
| Stem-loop sequence | AAGGUUAGAUUGGUAUUGCAAUGAAAGAAGACAAAGCGGUAAUGAGAGAGAGACAGGGAACAAGCAGAGCAUGGAUUGAGUUUACUAAAACAUUAAACGACUCUGUUUUGUCUCUACCCAUGCACUGCCUCUUCCCUGGCUCCCUCUUUUUUUCUCUAUAUUUCUCUCUCUCCUUUCAUUUCACAGCUUUCAAUGGAAUUUUAUUGCUACUGCUAACG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK228004.1 |
|
0.0 | Arabidopsis thaliana mRNA for putative peptide chain release factor, complete cds, clone: RAFL14-53-C21 | NA | coding protein | psRNATarget | |||||||||
| BX818937.1 |
|
0.0 | Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB29ZC05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) | NA | coding protein | psRNATarget | |||||||||
| NM_130270.4 |
|
0.0 | Arabidopsis thaliana Peptide chain release factor 1 mRNA | Peptide chain release factor 1(AT2G47020) | coding protein | psRNATarget | |||||||||
| AF325063.1 |
|
2.0 | Arabidopsis thaliana putative basic blue protein (plantacyanin) (At2g02850) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| AY097407.1 |
|
2.0 | Arabidopsis thaliana At2g02850/T17M13.2 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| AY084407.1 |
|
2.0 | Arabidopsis thaliana clone 10750 mRNA, complete sequence | NA | coding protein | psRNATarget | |||||||||
| BX821204.1 |
|
2.0 | Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL25ZA06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) | NA | coding protein | psRNATarget | |||||||||
| AY064141.1 |
|
2.0 | Arabidopsis thaliana At2g02850/T17M13.2 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_126340.3 |
|
2.0 | Arabidopsis thaliana plantacyanin (ARPN), mRNA | plantacyanin(ARPN) | coding protein | psRNATarget |
| 1 | PMID:15258262
"Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"; Sunkar R, Zhu JK; Plant Cell. 16:2001-2019(2004). |
| 2 | PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006). |
| 3 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 4 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |
| 5 | PMID:24119003
"Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots"; Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA; BMC Genomics. 14:701(2013). |