Search result

BaseInfo

ncRNA ID novel_gma_miR3740
Species Glycine max
Class miRNA
Genome position Chr15:1494822-1494928 [-]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 1 - CCGGUAGAACAAAUUGUUCA - 20
Stem-loop(if miRNA) --                    A    GGGGGGGG  U               A
  AACAAUUUGUUCUACCGGAA AACC        GG AGAGGCUACCGGAAG A
  |||||||||||||||||||| ||||        || ||||||||||||||| C
  UUGUUAAACAAGAUGGCCUU UUGG        CC UCUUCGAUGGCCUUC U
AC                    C    -AAGAAGA  -               U
Stem-loop sequence AACAAUUUGUUCUACCGGAAAAACCGGGGGGGGGGUAGAGGCUACCGGAAGAACUUCUUCCGGUAGCUUCUCCAGAAGAAGGUUCUUCCGGUAGAACAAAUUGUUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014778747.1
ncRNA:20   ACUUGUUAAACAAGAUGGCC   1
  *|=||||||||||||||=||
targets:2614   AGGACAAUUUGUUCUACUGG   2633

2.5 PREDICTED: Glycine max probable starch synthase 4, chloroplastic/amyloplastic (LOC100804775), transcript variant X2, mRNA probable starch synthase 4, chloroplastic/amyloplastic(LOC100804775) coding protein psRNATarget
XM_003531032.3
ncRNA:20   ACUUGUUAAACAAGAUGGCC   1
  *|=||||||||||||||=||
targets:2679   AGGACAAUUUGUUCUACUGG   2698

2.5 PREDICTED: Glycine max probable starch synthase 4, chloroplastic/amyloplastic (LOC100804775), transcript variant X1, mRNA probable starch synthase 4, chloroplastic/amyloplastic(LOC100804775) coding protein psRNATarget