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BaseInfo

ncRNA ID novel_gma_miR3738
Species Glycine max
Class miRNA
Genome position Chr15:5136227-5136337 [-]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 21
Mature sequence(if miRNA) 91 - UUUGUUUUCCUCUGAUUUUUU - 111
Stem-loop(if miRNA) --   G         GA      CUCUUU   - --  AAAACACACAAAAAAAUCAGA
  UUU UUUUCCUCU  UUUUUU      UUA U  UC                     A
  ||| |||||||||  ||||||      ||| |  ||                     C
  AGA AAAAGGAGA  AAAAAA      AUG A  UA                     C
UA   G         AA      -----A   A GU  AUAGUAGUUACAUAGUAAGAC
Stem-loop sequence UUUGUUUUCCUCUGAUUUUUUCUCUUUUUAUUCAAAACACACAAAAAAAUCAGAACCCAGAAUGAUACAUUGAUGAUAAUUGAAGUAAAAAAAAAAAGAGGAAAAGAGAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003542488.3
ncRNA:21   UUUUUUAGUCUCCUUUUGUUU   1
  |||||||||*|||||||||||
targets:4898   AAAAAAUCAAAGGAAAACAAA   4918

1.5 PREDICTED: Glycine max ethylene-insensitive protein 2-like (LOC100801190), mRNA ethylene-insensitive protein 2-like(LOC100801190) coding protein psRNATarget
XM_003536524.3
ncRNA:21   UUUUUUAGUCUCCUUUUGUUU   1
  ||=|||||||||||||||||=
targets:346   AAGAAAUCAGAGGAAAACAAG   366

2.0 PREDICTED: Glycine max uncharacterized LOC100800755 (LOC100800755), mRNA uncharacterized LOC100800755(LOC100800755) coding protein psRNATarget
XM_003523365.3
ncRNA:21   UUUUUUAGUCUCCUUUUGUUU   1
  *||||||*||||||||||||*
targets:3014   UAAAAAUGAGAGGAAAACAAU   3034

2.0 PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial (LOC100790756), mRNA putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial(LOC100790756) coding protein psRNATarget
XM_003519037.3
ncRNA:21   UUUUUUAGUCUCCUUUUGUUU   1
  *|=||||||||||||||=|||
targets:1789   UAGAAAUCAGAGGAAAAUAAA   1809

2.5 PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor At2g41710 (LOC100795084), mRNA AP2-like ethylene-responsive transcription factor At2g41710(LOC100795084) coding protein psRNATarget
XM_006606456.2
ncRNA:21   UUUUUUAGUCUCCUUUUGUUU   1
  |||||=|||||||||||*|||
targets:1294   AAAAAGUCAGAGGAAAAGAAA   1314

2.5 PREDICTED: Glycine max protein ALWAYS EARLY 2-like (LOC100789533), transcript variant X6, mRNA protein ALWAYS EARLY 2-like(LOC100789533) coding protein psRNATarget
XM_006606453.2
ncRNA:21   UUUUUUAGUCUCCUUUUGUUU   1
  |||||=|||||||||||*|||
targets:1310   AAAAAGUCAGAGGAAAAGAAA   1330

2.5 PREDICTED: Glycine max protein ALWAYS EARLY 2-like (LOC100789533), transcript variant X2, mRNA protein ALWAYS EARLY 2-like(LOC100789533) coding protein psRNATarget
XM_014772792.1
ncRNA:21   UUUUUUAGUCUCCUUUUGUUU   1
  |||||=|||||||||||*|||
targets:1320   AAAAAGUCAGAGGAAAAGAAA   1340

2.5 PREDICTED: Glycine max protein ALWAYS EARLY 2-like (LOC100789533), transcript variant X4, mRNA protein ALWAYS EARLY 2-like(LOC100789533) coding protein psRNATarget
XM_006606455.2
ncRNA:21   UUUUUUAGUCUCCUUUUGUUU   1
  |||||=|||||||||||*|||
targets:1457   AAAAAGUCAGAGGAAAAGAAA   1477

2.5 PREDICTED: Glycine max protein ALWAYS EARLY 2-like (LOC100789533), transcript variant X5, mRNA protein ALWAYS EARLY 2-like(LOC100789533) coding protein psRNATarget
XM_014772791.1
ncRNA:21   UUUUUUAGUCUCCUUUUGUUU   1
  |||||=|||||||||||*|||
targets:1456   AAAAAGUCAGAGGAAAAGAAA   1476

2.5 PREDICTED: Glycine max protein ALWAYS EARLY 2-like (LOC100789533), transcript variant X3, mRNA protein ALWAYS EARLY 2-like(LOC100789533) coding protein psRNATarget
XM_014772790.1
ncRNA:21   UUUUUUAGUCUCCUUUUGUUU   1
  |||||=|||||||||||*|||
targets:1458   AAAAAGUCAGAGGAAAAGAAA   1478

2.5 PREDICTED: Glycine max protein ALWAYS EARLY 2-like (LOC100789533), transcript variant X1, mRNA protein ALWAYS EARLY 2-like(LOC100789533) coding protein psRNATarget
XM_003545094.3
ncRNA:21   UUUUUUAGUCUCCUUUUGUUU   1
  =||||=||||||*||||||||
targets:1290   GAAAAGUCAGAGCAAAACAAA   1310

2.5 PREDICTED: Glycine max glycerol-3-phosphate acyltransferase 1-like (LOC100803875), mRNA glycerol-3-phosphate acyltransferase 1-like(LOC100803875) coding protein psRNATarget
XM_003539025.3
ncRNA:21   UUUUUUAGUCUCCUUUUGUUU   1
  *=|||*|||||||||||||=|
targets:681   UGAAAUUCAGAGGAAAACAGA   701

2.5 PREDICTED: Glycine max serine/arginine repetitive matrix protein 1-like (LOC100790051), transcript variant X3, mRNA serine/arginine repetitive matrix protein 1-like(LOC100790051) coding protein psRNATarget
XM_006603585.2
ncRNA:21   UUUUUUAGUCUCCUUUUGUUU   1
  =**==||||||||||||||||
targets:724   GUUGGAUCAGAGGAAAACAAA   744

3.0 PREDICTED: Glycine max serine/threonine protein kinase-like protein (LOC100499647), transcript variant X1, mRNA serine/threonine protein kinase-like protein(LOC100499647) coding protein psRNATarget
XM_014771321.1
ncRNA:21   UUUUUUAGUCUCCUUUUGUUU   1
  =**==||||||||||||||||
targets:606   GUUGGAUCAGAGGAAAACAAA   626

3.0 PREDICTED: Glycine max serine/threonine protein kinase-like protein (LOC100499647), transcript variant X2, mRNA serine/threonine protein kinase-like protein(LOC100499647) coding protein psRNATarget
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