Search result

BaseInfo

ncRNA ID novel_gma_miR3737
Species Glycine max
Class miRNA
Genome position Chr15:6265996-6266173 [-]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 159 - UGUUUGUCUGUUUCAAAUCU - 178
Stem-loop(if miRNA) --                    GAA           UCG                C         UUAUC      GUCAUCGUUGGAAGC
  UGUUUGUCUGUUUCAAAUCU   AUCCUUAAUCA   GAAAGAUUACAUGUUU UUUGGAUAU     UUGCUU               A
  ||||||||||||||||||||   |||||||||||   |||||||||||||||| |||||||||     ||||||
  ACAAAUAGACAAAGUUUAGG   UAGGGAUUAGU   UUUUCUAAUGUACAAA AGAUCUAUA     AGAGAA               A
UA                    AAC           UCA                U         ----C      ACAUUUUUUUAAACU
Stem-loop sequence UGUUUGUCUGUUUCAAAUCUGAAAUCCUUAAUCAUCGGAAAGAUUACAUGUUUCUUUGGAUAUUUAUCUUGCUUGUCAUCGUUGGAAGCAAUCAAAUUUUUUUACAAAGAGACAUAUCUAGAUAAACAUGUAAUCUUUUACUUGAUUAGGGAUCAAGGAUUUGAAACAGAUAAACAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006591894.2
ncRNA:20   UCUAAACUUUGUCUGUUUGU   1
  **||||||||||||||||=|
targets:1125   CUAUUUGAAACAGACAAAUA   1144

2.5 PREDICTED: Glycine max endoglucanase 8-like (LOC100808980), mRNA endoglucanase 8-like(LOC100808980) coding protein psRNATarget
XM_003517500.3
ncRNA:20   UCUAAACUUUGUCUGUUUGU   1
  ||||*|||||||*|||||||
targets:249   AGAUCUGAAACAAACAAACA   268

2.5 PREDICTED: Glycine max cellulose synthase-like protein D2 (LOC100792604), mRNA cellulose synthase-like protein D2(LOC100792604) coding protein psRNATarget