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BaseInfo

ncRNA ID novel_gma_miR3736
Species Glycine max
Class miRNA
Genome position Chr15:7649462-7649537 [-]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 21
Mature sequence(if miRNA) 1 - UUUCUGAUUGAUUGAUUAUGC - 21
Stem-loop(if miRNA) --          --    UU   UCUUUUACUUU    AUA
  AUGGUCAAUU  UCAG  AUU           GAUA   A
  ||||||||||  ||||  |||           ||||
  UAUUAGUUAG  AGUC  UAG           CUAU   U
CG          UU    UU   ----UACCAUU    CAA
Stem-loop sequence AUGGUCAAUUUCAGUUAUUUCUUUUACUUUGAUAAUAAUAACUAUCUUACCAUGAUUUCUGAUUGAUUGAUUAUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003523452.2
ncRNA:21   CGUA-UUAGUUAGUUAGUCUUU   1
  *|||-|||||||||||||||||
targets:27   UCAUUAAUCAAUCAAUCAGAAA   48

2.0 PREDICTED: Glycine max uncharacterized LOC100794618 (LOC100794618), mRNA uncharacterized LOC100794618(LOC100794618) coding protein psRNATarget
XM_014763222.1
ncRNA:21   CGUAUUA-GUUAGUUAGUCUUU   1
  *=|||||-||||||||||||||
targets:2340   AUAUAAUACAAUCAAUCAGAAA   2361

2.0 PREDICTED: Glycine max protein CHROMATIN REMODELING 20-like (LOC100794911), mRNA protein CHROMATIN REMODELING 20-like(LOC100794911) coding protein psRNATarget
XM_014769911.1
ncRNA:21   CGUAU--UAGUUAGUUAGUCUUU   1
  **|||--||||||||||||||||
targets:298   AAAUAGUAUCAAUCAAUCAGAAA   320

2.5 PREDICTED: Glycine max uncharacterized LOC100791390 (LOC100791390), transcript variant X3, mRNA uncharacterized LOC100791390(LOC100791390) coding protein psRNATarget
XM_014769910.1
ncRNA:21   CGUAU--UAGUUAGUUAGUCUUU   1
  **|||--||||||||||||||||
targets:298   AAAUAGUAUCAAUCAAUCAGAAA   320

2.5 PREDICTED: Glycine max uncharacterized LOC100791390 (LOC100791390), transcript variant X2, mRNA uncharacterized LOC100791390(LOC100791390) coding protein psRNATarget
XM_003549755.3
ncRNA:21   CGUAU--UAGUUAGUUAGUCUUU   1
  **|||--||||||||||||||||
targets:297   AAAUAGUAUCAAUCAAUCAGAAA   319

2.5 PREDICTED: Glycine max uncharacterized LOC100791390 (LOC100791390), transcript variant X1, mRNA uncharacterized LOC100791390(LOC100791390) coding protein psRNATarget
XM_003527555.3
ncRNA:21   CGUAUUAGUUAGUUAGUCUUU   1
  *|||*|||||||||||*||||
targets:351   CCAUCAUCAAUCAAUCCGAAA   371

2.5 PREDICTED: Glycine max uncharacterized LOC100807066 (LOC100807066), mRNA uncharacterized LOC100807066(LOC100807066) coding protein psRNATarget