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BaseInfo

ncRNA ID novel_gma_miR3728
Species Glycine max
Class miRNA
Genome position Chr15:49400250-49400329 [-]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 61 - AUGGUUUGUAAAUAAAUUGU - 80
Stem-loop(if miRNA) --     UU         UUGUAUAAAUUAUU          
  AUGGU  GUAAAUAAA              UCUAGAAAUGA
  |||||  |||||||||              ||||||||||G
  UAUUA  UAUUUAUUU              AGGUUUUUACC
UU     -U         ----UUGACUCAAU          
Stem-loop sequence AUGGUUUGUAAAUAAAUUGUAUAAAUUAUUUCUAGAAAUGAGCCAUUUUUGGAUAACUCAGUUUUUAUUUAUUAUUAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003518319.3
ncRNA:20   UGUUAAAUAAAUGUUUGGUA   1
  =|||||||||||=|||||||
targets:2154   GCAAUUUAUUUAUAAACCAU   2173

1.5 PREDICTED: Glycine max transcription repressor KAN1-like (LOC100796325), transcript variant X1, mRNA transcription repressor KAN1-like(LOC100796325) coding protein psRNATarget
XM_014767275.1
ncRNA:20   UGUUAAAUAAAUGUUUGGUA   1
  =|||||||||||=|||||||
targets:2271   GCAAUUUAUUUAUAAACCAU   2290

1.5 PREDICTED: Glycine max transcription repressor KAN1-like (LOC100812229), transcript variant X2, mRNA transcription repressor KAN1-like(LOC100812229) coding protein psRNATarget
XM_003544310.3
ncRNA:20   UGUUAAAUAAAUGUUUGGUA   1
  =|||||||||||=|||||||
targets:2279   GCAAUUUAUUUAUAAACCAU   2298

1.5 PREDICTED: Glycine max transcription repressor KAN1-like (LOC100812229), transcript variant X1, mRNA transcription repressor KAN1-like(LOC100812229) coding protein psRNATarget