Search result

BaseInfo

ncRNA ID novel_gma_miR3705
Species Glycine max
Class miRNA
Genome position Chr13:38556735-38556856 [+]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 1 - AUCUGUAUAACUCAUACGGA - 20
Stem-loop(if miRNA) --        A   C      A        C    C  G         ------AA       U
  AUCUGUAU ACU AUACGG UCAACAAU CGUA GA UUUUUUUUA        AUAAAAU A
  |||||||| ||| |||||| |||||||| |||| || |||||||||        |||||||
  UAGGUAUA UGA UAUGUC AGUUGUUA GUAU CU AAAAAAAAU        UGUUUUA U
GU        C   A      C        A    A  A         AAAAAAAA       U
Stem-loop sequence AUCUGUAUAACUCAUACGGAUCAACAAUCCGUACGAGUUUUUUUUAAAAUAAAAUUAUUAUUUUGUAAAAAAAAUAAAAAAAAAUCAUAUGAAUUGUUGACCUGUAUAAGUCAUAUGGAUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014768839.1
ncRNA:20   AGGCAUACUCAAUAUGUCUA   1
  *||*|=*|||||||||||||
targets:4158   CCCAUGGGAGUUAUACAGAU   4177

3.0 PREDICTED: Glycine max protein TSS-like (LOC100784117), transcript variant X2, mRNA protein TSS-like(LOC100784117) coding protein psRNATarget
XM_014768838.1
ncRNA:20   AGGCAUACUCAAUAUGUCUA   1
  *||*|=*|||||||||||||
targets:4158   CCCAUGGGAGUUAUACAGAU   4177

3.0 PREDICTED: Glycine max protein TSS-like (LOC100784117), transcript variant X1, mRNA protein TSS-like(LOC100784117) coding protein psRNATarget
XM_006598840.2
ncRNA:20   AGGCAUACUCAAUAUGUCUA   1
  *||*|=*|||||||||||||
targets:4195   CCCAUGGGAGUUAUACAGAU   4214

3.0 PREDICTED: Glycine max protein TSS-like (LOC100784117), transcript variant X3, mRNA protein TSS-like(LOC100784117) coding protein psRNATarget