Search result

BaseInfo

ncRNA ID novel_gma_miR3704
Species Glycine max
Class miRNA
Genome position Chr13:36530651-36530691 [+]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 22 - UACGGAUCAAGUUGAUCCGA - 41
Stem-loop(if miRNA) --       G        GA
  GGAUCAA UUGAUCCG  A
  ||||||| ||||||||  G
  CCUAGUU AACUAGGC  U
AG       G        AU
Stem-loop sequence GGAUCAAGUUGAUCCGGAAGUUACGGAUCAAGUUGAUCCGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006600975.2
ncRNA:20   AGCCUAGUUGAACUAGGCAU   1
  *|||||||||||||||||||
targets:1253   ACGGAUCAACUUGAUCCGUA   1272

0.0 PREDICTED: Glycine max basic leucine zipper 9-like (LOC100776831), mRNA basic leucine zipper 9-like(LOC100776831) coding protein psRNATarget
XM_003547498.3
ncRNA:20   AGCCUAGUUGAACUAGGCAU   1
  *=||||||||||||||||||
targets:458   AUGGAUCAACUUGAUCCGUA   477

1.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X1, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_014768353.1
ncRNA:20   AGCCUAGUUGAACUAGGCAU   1
  *=||||||||||||||||||
targets:485   GUGGAUCAACUUGAUCCGUA   504

1.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_014768353.1
ncRNA:20   AGCCUAGUUGAACUAGGCAU   1
  *=||||||||||||||||||
targets:1053   AUGGAUCAACUUGAUCCGUA   1072

1.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_003524153.3
ncRNA:20   AGCCUAGUUGAACUAGGCAU   1
  *||||||||*||||||||||
targets:235   ACGGAUCAAGUUGAUCCGUA   254

1.5 PREDICTED: Glycine max uncharacterized LOC100805437 (LOC100805437), mRNA uncharacterized LOC100805437(LOC100805437) coding protein psRNATarget
XM_006600975.2
ncRNA:20   AGCCUAGUUGAACUAGGCAU   1
  *|*|||=|||||||||||||
targets:1225   ACAGAUUAACUUGAUCCGUA   1244

2.0 PREDICTED: Glycine max basic leucine zipper 9-like (LOC100776831), mRNA basic leucine zipper 9-like(LOC100776831) coding protein psRNATarget
XM_003547498.3
ncRNA:20   AGCCUAGUUGAACUAGGCAU   1
  *=||||=|||||||||||||
targets:25   GUGGAUUAACUUGAUCCGUA   44

2.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X1, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_014768353.1
ncRNA:20   AGCCUAGUUGAACUAGGCAU   1
  *=||||=|||||||||||||
targets:620   GUGGAUUAACUUGAUCCGUA   639

2.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_003547498.3
ncRNA:20   AGCCUAGUUGAACUAGGCAU   1
  *||||||||||||||||*|=
targets:415   ACGGAUCAACUUGAUCCAUG   434

2.5 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X1, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_003547498.3
ncRNA:20   AGCCUAGUUGAACUAGGCAU   1
  *|*||||||*||||||||||
targets:89   GCAGAUCAAAUUGAUCCGUA   108

2.5 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X1, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_014768353.1
ncRNA:20   AGCCUAGUUGAACUAGGCAU   1
  *||||||||||||||||*|=
targets:1010   ACGGAUCAACUUGAUCCAUG   1029

2.5 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_014768353.1
ncRNA:20   AGCCUAGUUGAACUAGGCAU   1
  *|*||||||*||||||||||
targets:684   GCAGAUCAAAUUGAUCCGUA   703

2.5 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_006577670.2
ncRNA:20   AGCCUAGUUGAACUAGGCAU   1
  *=*|*|||||||||||||||
targets:1047   AUUGUUCAACUUGAUCCGUA   1066

3.0 PREDICTED: Glycine max serine/threonine-protein kinase haspin-like (LOC102663674), mRNA serine/threonine-protein kinase haspin-like(LOC102663674) coding protein psRNATarget
XM_006604718.2
ncRNA:20   AGCCUAGUUGAACUAGGCAU   1
  *=*|*|||||||||||||||
targets:2079   AUUGUUCAACUUGAUCCGUA   2098

3.0 PREDICTED: Glycine max serine/threonine-protein kinase haspin-like (LOC100790036), mRNA serine/threonine-protein kinase haspin-like(LOC100790036) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.