Search result

BaseInfo

ncRNA ID	novel_gma_miR3699
Species	Glycine max
Class	miRNA
Genome position	Chr13:31227881-31227971 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451676
Length	21
Mature sequence(if miRNA)	71 - ACUGAUAGGAUAUCGACAAAG - 91
Stem-loop(if miRNA)	--G      A   G     GU    CAA    --    -CC   AAUC    UGUUGA UGU CUGUU  UUUC   CACC  UUAA   UCU    C    |||||| ||| |||||  ||||   ||||  ||||   |||    ACAGCU AUA GAUAG  AAAG   GUGG  AAUU   AGA    A GAA      -   G     UC    -UA    UC    UUA   CGUA
Stem-loop sequence	GUGUUGAAUGUGCUGUUGUUUUCCAACACCUUAACCUCUAAUCCAAUGCAGAAUUUUAACUGGUGAUGAAACUGAUAGGAUAUCGACAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003528435.3	ncRNA:21   GAAACAGCUAUAGGAUAGUCA   1   **|||||||||||||||*||| targets:217   AAUUGUCGAUAUCCUAUGAGU   237 Target Full Sequence	1.5	PREDICTED: Glycine max phospholipase A1-IIgamma-like (LOC100784086), mRNA	phospholipase A1-IIgamma-like(LOC100784086)	coding protein	psRNATarget
XM_003540903.3	ncRNA:21   GAAACAGCUAUAGGAUAGUCA   1   *|||*|||||||=|||||||| targets:1762   AUUUAUCGAUAUUCUAUCAGU   1782 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor VOZ1-like (LOC100808629), transcript variant X4, mRNA	transcription factor VOZ1-like(LOC100808629)	coding protein	psRNATarget
XM_014764866.1	ncRNA:21   GAAACAGCUAUAGGAUAGUCA   1   *|||*|||||||=|||||||| targets:1766   AUUUAUCGAUAUUCUAUCAGU   1786 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor VOZ1-like (LOC100808629), transcript variant X5, mRNA	transcription factor VOZ1-like(LOC100808629)	coding protein	psRNATarget
XM_014764865.1	ncRNA:21   GAAACAGCUAUAGGAUAGUCA   1   *|||*|||||||=|||||||| targets:1866   AUUUAUCGAUAUUCUAUCAGU   1886 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor VOZ1-like (LOC100808629), transcript variant X3, mRNA	transcription factor VOZ1-like(LOC100808629)	coding protein	psRNATarget
XM_006592383.2	ncRNA:21   GAAACAGCUAUAGGAUAGUCA   1   *|||*|||||||=|||||||| targets:1978   AUUUAUCGAUAUUCUAUCAGU   1998 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor VOZ1-like (LOC100808629), transcript variant X1, mRNA	transcription factor VOZ1-like(LOC100808629)	coding protein	psRNATarget
XM_014764864.1	ncRNA:21   GAAACAGCUAUAGGAUAGUCA   1   *|||*|||||||=|||||||| targets:2133   AUUUAUCGAUAUUCUAUCAGU   2153 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor VOZ1-like (LOC100808629), transcript variant X2, mRNA	transcription factor VOZ1-like(LOC100808629)	coding protein	psRNATarget