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BaseInfo

ncRNA ID novel_gma_miR3695
Species Glycine max
Class miRNA
Genome position Chr1:23961081-23961213 [+]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 114 - UUUAGAGUUGAUGAAUAUUU - 133
Stem-loop(if miRNA) -AUAC    A      -     U    U    AUAUUC        ---U    --- UUCUUUUUAUGCCU
     UUCA CAGCUC AAGCA UUAU UGAC      AACAAGGA    GUAA   A              A
     |||| |||||| ||||| |||| ||||      ||||||||    ||||   |
     AAGU GUUGAG UUUGU GAUG AUUG      UUGUUCCU    CGGA   A              A
UUUAU    A      A     U    C    -----A        UUUC    GUA UUUACUGAAAUACU
Stem-loop sequence AUACUUCAACAGCUCAAGCAUUUAUUUGACAUAUUCAACAAGGAUGUAAAUUCUUUUUAUGCCUAAUCAUAAAGUCAUUUAAUGAGGCCUUUUCCUUGUUAGUUACGUAGUUGUUUAGAGUUGAUGAAUAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014762050.1
ncRNA:20   UUUAUAAGUAGUUGAGAUUU   1
  ***||||||||||||||||*
targets:1408   UCCUAUUCAUCAACUCUAAC   1427

3.0 PREDICTED: Glycine max zinc finger BED domain-containing protein RICESLEEPER 1-like (LOC106794558), transcript variant X1, mRNA zinc finger BED domain-containing protein RICESLEEPER 1-like(LOC106794558) coding protein psRNATarget
XM_014762051.1
ncRNA:20   UUUAUAAGUAGUUGAGAUUU   1
  ***||||||||||||||||*
targets:1408   UCCUAUUCAUCAACUCUAAC   1427

3.0 PREDICTED: Glycine max zinc finger BED domain-containing protein RICESLEEPER 1-like (LOC106794558), transcript variant X2, mRNA zinc finger BED domain-containing protein RICESLEEPER 1-like(LOC106794558) coding protein psRNATarget
AK245265.1
ncRNA:20   UUUAUAAGUAGUUGAGAUUU   1
  ***||||||||||||||||*
targets:1384   UCCUAUUCAUCAACUCUAAC   1403

3.0 Glycine max cDNA, clone: GMFL01-25-I03 NA coding protein psRNATarget