ncRNA ID | novel_gma_miR3695 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr1:23961081-23961213 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451676 |
Length | 20 |
Mature sequence(if miRNA) | 114 - UUUAGAGUUGAUGAAUAUUU - 133 |
Stem-loop(if miRNA) |
-AUAC    A      -     U    U    AUAUUC        ---U    --- UUCUUUUUAUGCCU      UUCA CAGCUC AAGCA UUAU UGAC      AACAAGGA    GUAA   A              A      |||| |||||| ||||| |||| ||||      ||||||||    ||||   |      AAGU GUUGAG UUUGU GAUG AUUG      UUGUUCCU    CGGA   A              A UUUAU    A      A     U    C    -----A        UUUC    GUA UUUACUGAAAUACU |
Stem-loop sequence | AUACUUCAACAGCUCAAGCAUUUAUUUGACAUAUUCAACAAGGAUGUAAAUUCUUUUUAUGCCUAAUCAUAAAGUCAUUUAAUGAGGCCUUUUCCUUGUUAGUUACGUAGUUGUUUAGAGUUGAUGAAUAUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_014762050.1 |
|
3.0 | PREDICTED: Glycine max zinc finger BED domain-containing protein RICESLEEPER 1-like (LOC106794558), transcript variant X1, mRNA | zinc finger BED domain-containing protein RICESLEEPER 1-like(LOC106794558) | coding protein | psRNATarget | |||||||||
XM_014762051.1 |
|
3.0 | PREDICTED: Glycine max zinc finger BED domain-containing protein RICESLEEPER 1-like (LOC106794558), transcript variant X2, mRNA | zinc finger BED domain-containing protein RICESLEEPER 1-like(LOC106794558) | coding protein | psRNATarget | |||||||||
AK245265.1 |
|
3.0 | Glycine max cDNA, clone: GMFL01-25-I03 | NA | coding protein | psRNATarget |