Search result

BaseInfo

ncRNA ID novel_gma_miR3682
Species Glycine max
Class miRNA
Genome position Chr13:32911490-32911534 [-]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 1 - ACGUUUGCAUAUCAAUAAUG - 20
Stem-loop(if miRNA) ---UUUUU          UG  U
        AUGUGUAAAU  GA C
        ||||||||||  ||
        UAUACGUUUG  CU A
GUAAUAAC          CA  U
Stem-loop sequence UUUUUAUGUGUAAAUUGGAUCAUUCACGUUUGCAUAUCAAUAAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006585375.2
ncRNA:20   GUAAUAACUAUACGUUUGCA   1
  =||||*||||||||||||*|
targets:577   UAUUAGUGAUAUGCAAACUU   596

2.5 PREDICTED: Glycine max CST complex subunit STN1-like (LOC100778207), transcript variant X4, mRNA CST complex subunit STN1-like(LOC100778207) coding protein psRNATarget
XM_003531482.3
ncRNA:20   GUAAUAACUAUACGUUUGCA   1
  =||||*||||||||||||*|
targets:667   UAUUAGUGAUAUGCAAACUU   686

2.5 PREDICTED: Glycine max CST complex subunit STN1-like (LOC100778207), transcript variant X6, mRNA CST complex subunit STN1-like(LOC100778207) coding protein psRNATarget
XM_006585376.2
ncRNA:20   GUAAUAACUAUACGUUUGCA   1
  =||||*||||||||||||*|
targets:850   UAUUAGUGAUAUGCAAACUU   869

2.5 PREDICTED: Glycine max CST complex subunit STN1-like (LOC100778207), transcript variant X5, mRNA CST complex subunit STN1-like(LOC100778207) coding protein psRNATarget