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BaseInfo

ncRNA ID novel_gma_miR3680
Species Glycine max
Class miRNA
Genome position Chr13:43637035-43637139 [-]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 1 - CGAAAGGAAAAAAAAAAAAA - 20
Stem-loop(if miRNA) --AA     C  A         U  --A      U   A  UAAAA        CU
    UUUUU UU UCUUUUGGA UG   UAAUUC GAA GU     AGAAUUAU  U
    ||||| || ||||||||| ||   |||||| ||| ||     ||||||||
    AAAAA AA GGAAAGCUU AC   GUUAAG CUU CA     UUUUAAUG  C
AAAA     A  A         U  AAA      U   A  -----        UU
Stem-loop sequence AAUUUUUCUUAUCUUUUGGAUUGAUAAUUCUGAAAGUUAAAAAGAAUUAUCUUCUUGUAAUUUUACAUUCUGAAUUGAAACAUUUCGAAAGGAAAAAAAAAAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014764339.1
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||||||||*
targets:1164   UUUUUUUUUUUUUCCUUUCU   1183

1.0 PREDICTED: Glycine max BAH and coiled-coil domain-containing protein 1-like (LOC100800993), transcript variant X1, mRNA BAH and coiled-coil domain-containing protein 1-like(LOC100800993) coding protein psRNATarget
XM_006591822.2
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||||||||*
targets:1164   UUUUUUUUUUUUUCCUUUCU   1183

1.0 PREDICTED: Glycine max BAH and coiled-coil domain-containing protein 1-like (LOC100800993), transcript variant X2, mRNA BAH and coiled-coil domain-containing protein 1-like(LOC100800993) coding protein psRNATarget
XM_006591282.2
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||||||||*
targets:2863   UUUUUUUUUUUUUCCUUUCU   2882

1.0 PREDICTED: Glycine max uncharacterized LOC100817502 (LOC100817502), transcript variant X1, mRNA uncharacterized LOC100817502(LOC100817502) coding protein psRNATarget
XM_006591283.2
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||||||||*
targets:2761   UUUUUUUUUUUUUCCUUUCU   2780

1.0 PREDICTED: Glycine max uncharacterized LOC100817502 (LOC100817502), transcript variant X2, mRNA uncharacterized LOC100817502(LOC100817502) coding protein psRNATarget
XM_003546184.3
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||||||||*
targets:1116   UUUUUUUUUUUUUCCUUUCU   1135

1.0 PREDICTED: Glycine max uncharacterized LOC100794863 (LOC100794863), mRNA uncharacterized LOC100794863(LOC100794863) coding protein psRNATarget
XM_003534151.3
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||||||||*
targets:169   UUUUUUUUUUUUUCCUUUCU   188

1.0 PREDICTED: Glycine max protein CbxX, chromosomal (LOC100796476), transcript variant X1, mRNA protein CbxX, chromosomal(LOC100796476) coding protein psRNATarget
XM_014762275.1
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||||||||*
targets:171   UUUUUUUUUUUUUCCUUUCU   190

1.0 PREDICTED: Glycine max protein CbxX, chromosomal (LOC100796476), transcript variant X2, mRNA protein CbxX, chromosomal(LOC100796476) coding protein psRNATarget
BT099421.1
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||||||||*
targets:4   UUUUUUUUUUUUUCCUUUCA   23

1.0 Soybean clone JCVI-FLGm-13F12 unknown mRNA NA coding protein psRNATarget
XM_003554770.3
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||||||=|
targets:264   UUUUUUUUUUUUUCCUUUUG   283

1.5 PREDICTED: Glycine max uncharacterized LOC100776366 (LOC100776366), transcript variant X1, mRNA uncharacterized LOC100776366(LOC100776366) coding protein psRNATarget
XM_006603713.2
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||||||=|
targets:265   UUUUUUUUUUUUUCCUUUUG   284

1.5 PREDICTED: Glycine max uncharacterized LOC100776366 (LOC100776366), transcript variant X2, mRNA uncharacterized LOC100776366(LOC100776366) coding protein psRNATarget
BT098663.1
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||=||||||
targets:4   UUUUUUUUUUUUUUCUUUCG   23

1.5 Soybean clone JCVI-FLGm-23G8 unknown mRNA NA coding protein psRNATarget
XM_003554980.3
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||||||=|
targets:881   UUUUUUUUUUUUUCCUUUUG   900

1.5 PREDICTED: Glycine max basic leucine zipper 43-like (LOC100791105), mRNA basic leucine zipper 43-like(LOC100791105) coding protein psRNATarget
XM_006585932.2
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  *|||||||||||||=|||||
targets:2393   CUUUUUUUUUUUUCUUUUCG   2412

1.5 PREDICTED: Glycine max probable beta-1,3-galactosyltransferase 19 (LOC100788539), mRNA probable beta-1,3-galactosyltransferase 19(LOC100788539) coding protein psRNATarget
XM_006573922.2
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  *|||||||||||||=|||||
targets:54   AUUUUUUUUUUUUCUUUUCG   73

1.5 PREDICTED: Glycine max auxilin-like protein 1 (LOC102662311), partial mRNA auxilin-like protein 1(LOC102662311) coding protein psRNATarget
XM_006598908.2
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||*|||||
targets:86   UUUUUUUUUUUUUCAUUUCG   105

1.5 PREDICTED: Glycine max beta-glucosidase BoGH3B-like (LOC100779642), transcript variant X2, mRNA beta-glucosidase BoGH3B-like(LOC100779642) coding protein psRNATarget
XM_003543643.3
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||*|||||
targets:12   UUUUUUUUUUUUUCGUUUCG   31

1.5 PREDICTED: Glycine max probable sodium-coupled neutral amino acid transporter 6 (LOC100791860), mRNA probable sodium-coupled neutral amino acid transporter 6(LOC100791860) coding protein psRNATarget
XM_003548387.3
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||=|||||*
targets:133   UUUUUUUUUUUUUUCUUUCU   152

2.5 PREDICTED: Glycine max uncharacterized LOC100807455 (LOC100807455), transcript variant X1, mRNA uncharacterized LOC100807455(LOC100807455) coding protein psRNATarget
XM_003542655.3
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||=|||||*
targets:450   UUUUUUUUUUUUUUCUUUCU   469

2.5 PREDICTED: Glycine max mediator of RNA polymerase II transcription subunit 1-like (LOC100800475), transcript variant X1, mRNA mediator of RNA polymerase II transcription subunit 1-like(LOC100800475) coding protein psRNATarget
XM_006598860.2
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||=|||||*
targets:135   UUUUUUUUUUUUUUCUUUCU   154

2.5 PREDICTED: Glycine max uncharacterized LOC100807455 (LOC100807455), transcript variant X2, mRNA uncharacterized LOC100807455(LOC100807455) coding protein psRNATarget
XM_006593516.2
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||=|||||*
targets:452   UUUUUUUUUUUUUUCUUUCU   471

2.5 PREDICTED: Glycine max mediator of RNA polymerase II transcription subunit 1-like (LOC100800475), transcript variant X2, mRNA mediator of RNA polymerase II transcription subunit 1-like(LOC100800475) coding protein psRNATarget
XM_006587759.2
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||=|||||*
targets:6   UUUUUUUUUUUUUUCUUUCA   25

2.5 PREDICTED: Glycine max uncharacterized LOC100792279 (LOC100792279), transcript variant X1, mRNA uncharacterized LOC100792279(LOC100792279) coding protein psRNATarget
XM_014770699.1
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||||||=*
targets:567   UUUUUUUUUUUUUCCUUUUU   586

2.5 PREDICTED: Glycine max fimbrin-1-like (LOC100810854), transcript variant X1, mRNA fimbrin-1-like(LOC100810854) coding protein psRNATarget
BT094208.1
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||*||||||*
targets:1397   UUUUUUUUUUUUCCCUUUCC   1416

2.5 Soybean clone JCVI-FLGm-24N21 unknown mRNA NA coding protein psRNATarget
XM_006587422.2
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||||||=*
targets:455   UUUUUUUUUUUUUCCUUUUA   474

2.5 PREDICTED: Glycine max nuclear poly(A) polymerase 1 (LOC100816915), transcript variant X2, mRNA nuclear poly(A) polymerase 1(LOC100816915) coding protein psRNATarget
XM_006598837.2
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||||||=*
targets:2787   UUUUUUUUUUUUUCCUUUUU   2806

2.5 PREDICTED: Glycine max auxin response factor 18 (LOC100795763), transcript variant X1, mRNA auxin response factor 18(LOC100795763) coding protein psRNATarget
XM_003534105.3
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||||||=*
targets:423   UUUUUUUUUUUUUCCUUUUA   442

2.5 PREDICTED: Glycine max nuclear poly(A) polymerase 1 (LOC100816915), transcript variant X1, mRNA nuclear poly(A) polymerase 1(LOC100816915) coding protein psRNATarget
XM_006598838.2
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||||||=*
targets:2778   UUUUUUUUUUUUUCCUUUUU   2797

2.5 PREDICTED: Glycine max auxin response factor 18 (LOC100795763), transcript variant X2, mRNA auxin response factor 18(LOC100795763) coding protein psRNATarget
AK244892.1
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||||||=*
targets:389   UUUUUUUUUUUUUCCUUUUA   408

2.5 Glycine max cDNA, clone: GMFL01-16-C07 NA coding protein psRNATarget
XM_003545162.3
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||||||=*
targets:2801   UUUUUUUUUUUUUCCUUUUU   2820

2.5 PREDICTED: Glycine max conserved oligomeric Golgi complex subunit 5-like (LOC100806353), mRNA conserved oligomeric Golgi complex subunit 5-like(LOC100806353) coding protein psRNATarget
XM_014776609.1
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||||||=*
targets:26   UUUUUUUUUUUUUCCUUUUC   45

2.5 PREDICTED: Glycine max uncharacterized LOC100801395 (LOC100801395), mRNA uncharacterized LOC100801395(LOC100801395) coding protein psRNATarget
XM_003520062.3
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||||||=*
targets:251   UUUUUUUUUUUUUCCUUUUU   270

2.5 PREDICTED: Glycine max putative uncharacterized protein DDB_G0287457 (LOC100807311), mRNA putative uncharacterized protein DDB_G0287457(LOC100807311) coding protein psRNATarget
XM_006602934.2
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||=|||||*
targets:175   UUUUUUUUUUUUUUCUUUCU   194

2.5 PREDICTED: Glycine max translation initiation factor eIF-2B subunit delta-like (LOC100785938), transcript variant X1, mRNA translation initiation factor eIF-2B subunit delta-like(LOC100785938) coding protein psRNATarget
XM_014764964.1
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||=|||||*
targets:879   UUUUUUUUUUUUUUCUUUCU   898

2.5 PREDICTED: Glycine max uncharacterized LOC100803123 (LOC100803123), transcript variant X12, mRNA uncharacterized LOC100803123(LOC100803123) coding protein psRNATarget
XM_014771502.1
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||=|||||*
targets:26   UUUUUUUUUUUUUUCUUUCU   45

2.5 PREDICTED: Glycine max exocyst complex component EXO70B1-like (LOC100820172), mRNA exocyst complex component EXO70B1-like(LOC100820172) coding protein psRNATarget
XM_003551252.3
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||=||||*
targets:214   UUUUUUUUUUUUUCUUUUCA   233

2.5 PREDICTED: Glycine max transcription factor DIVARICATA-like (LOC100784163), mRNA transcription factor DIVARICATA-like(LOC100784163) coding protein psRNATarget
XM_003530036.3
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||=|||||*
targets:1932   UUUUUUUUUUUUUUCUUUCU   1951

2.5 PREDICTED: Glycine max transcription repressor KAN1-like (LOC100796973), transcript variant X1, mRNA transcription repressor KAN1-like(LOC100796973) coding protein psRNATarget
XM_003518758.3
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||||||=*
targets:2141   UUUUUUUUUUUUUCCUUUUA   2160

2.5 PREDICTED: Glycine max probable indole-3-acetic acid-amido synthetase GH3.1 (LOC100776488), mRNA probable indole-3-acetic acid-amido synthetase GH3.1(LOC100776488) coding protein psRNATarget
AK245883.1
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||=||||*
targets:189   UUUUUUUUUUUUUCUUUUCA   208

2.5 Glycine max cDNA, clone: GMFL01-44-M06 NA coding protein psRNATarget
XM_003547996.3
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||||||=*
targets:12   UUUUUUUUUUUUUCCUUUUU   31

2.5 PREDICTED: Glycine max probable magnesium transporter NIPA8 (LOC100812264), transcript variant X1, mRNA probable magnesium transporter NIPA8(LOC100812264) coding protein psRNATarget
XM_006599357.2
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||||||=*
targets:12   UUUUUUUUUUUUUCCUUUUU   31

2.5 PREDICTED: Glycine max probable magnesium transporter NIPA8 (LOC100812264), transcript variant X2, mRNA probable magnesium transporter NIPA8(LOC100812264) coding protein psRNATarget
XM_003555318.3
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||=|||||*
targets:1527   UUUUUUUUUUUUUUCUUUCA   1546

2.5 PREDICTED: Glycine max transcription factor TCP19-like (LOC100819475), transcript variant X1, mRNA transcription factor TCP19-like(LOC100819475) coding protein psRNATarget
XM_006606025.2
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||=|||||*
targets:1521   UUUUUUUUUUUUUUCUUUCA   1540

2.5 PREDICTED: Glycine max transcription factor TCP19-like (LOC100819475), transcript variant X2, mRNA transcription factor TCP19-like(LOC100819475) coding protein psRNATarget
XM_006589027.2
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||=||||*
targets:1851   UUUUUUUUUUUUUCUUUUCA   1870

2.5 PREDICTED: Glycine max transcription factor MYB86 (LOC100815881), mRNA transcription factor MYB86(LOC100815881) coding protein psRNATarget
XM_014772281.1
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||=|||||*
targets:1406   UUUUUUUUUUUUUUCUUUCA   1425

2.5 PREDICTED: Glycine max transcription factor TCP19-like (LOC100819475), transcript variant X3, mRNA transcription factor TCP19-like(LOC100819475) coding protein psRNATarget
XM_003536441.3
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||||||=*
targets:1745   UUUUUUUUUUUUUCCUUUUU   1764

2.5 PREDICTED: Glycine max 3-ketoacyl-CoA synthase 11-like (LOC100801121), mRNA 3-ketoacyl-CoA synthase 11-like(LOC100801121) coding protein psRNATarget
XM_014777913.1
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||=|||||*
targets:1587   UUUUUUUUUUUUUUCUUUCU   1606

2.5 PREDICTED: Glycine max transcription repressor KAN1-like (LOC100796973), transcript variant X2, mRNA transcription repressor KAN1-like(LOC100796973) coding protein psRNATarget
XM_006583415.2
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||=|||||*
targets:1584   UUUUUUUUUUUUUUCUUUCU   1603

2.5 PREDICTED: Glycine max transcription repressor KAN1-like (LOC100796973), transcript variant X3, mRNA transcription repressor KAN1-like(LOC100796973) coding protein psRNATarget
XM_003529620.3
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||=|||||*
targets:1670   UUUUUUUUUUUUUUCUUUCU   1689

2.5 PREDICTED: Glycine max U-box domain-containing protein 4 (LOC100792402), transcript variant X1, mRNA U-box domain-containing protein 4(LOC100792402) coding protein psRNATarget
XM_006601657.2
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||=|||||*
targets:379   UUUUUUUUUUUUUUCUUUCU   398

2.5 PREDICTED: Glycine max protein kinase (LOC100305440), transcript variant X1, mRNA protein kinase(LOC100305440) coding protein psRNATarget
BT094713.1
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||=|||||*
targets:2   UUUUUUUUUUUUUUCUUUCA   21

2.5 Soybean clone JCVI-FLGm-24P20 unknown mRNA NA coding protein psRNATarget
XM_014762078.1
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  |||||||||||||=|||||*
targets:216   UUUUUUUUUUUUUUCUUUCU   235

2.5 PREDICTED: Glycine max 1-aminocyclopropane-1-carboxylate oxidase 1-like (LOC100816546), mRNA 1-aminocyclopropane-1-carboxylate oxidase 1-like(LOC100816546) coding protein psRNATarget
BT094957.1
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||||||=*
targets:8   UUUUUUUUUUUUUCCUUUUU   27

2.5 Soybean clone JCVI-FLGm-25C7 unknown mRNA NA coding protein psRNATarget
XM_014768282.1
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||=||||*
targets:424   UUUUUUUUUUUUUCUUUUCU   443

2.5 PREDICTED: Glycine max CASP-like protein 1D2 (LOC100815104), mRNA CASP-like protein 1D2(LOC100815104) coding protein psRNATarget
XM_003547834.3
ncRNA:20   AAAAAAAAAAAAAGGAAAGC   1
  ||||||||||||||||||=*
targets:1166   UUUUUUUUUUUUUCCUUUUC   1185

2.5 PREDICTED: Glycine max RING-H2 finger protein ATL8-like (LOC100813341), mRNA RING-H2 finger protein ATL8-like(LOC100813341) coding protein psRNATarget
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