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BaseInfo

ncRNA ID novel_gma_miR3679
Species Glycine max
Class miRNA
Genome position Chr13:45873697-45873905 [+]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 1 - UAGGGUUUAGGGUUUAAGGU - 20
Stem-loop(if miRNA) --    G      G      G      G      G      G      G      G      G      GGG      G      G      G      G     
  UAGG UUUAGG UUUAAG UUUAGG UUUAGG UUUAGG UUUAGG UUUAGG UUUAGG UUUAGA   UUUAGG UUUAGG UUUAGG UUUAGG UUUAGG
  |||| |||||| |||||| |||||| |||||| |||||| |||||| |||||| |||||| ||||||   |||||| |||||| |||||| |||||| |||||G
  AUUU GGAUUU GGAUUU GGAUUU GGAUUU GGAUUU GGAUUU GGAUUU GGAUUU GGAUUU   GGAUUU GGAUUU GGAUUU GGAUUU GGAUUU
GG    G      G      G      G      G      G      G      G      G      --G      G      G      G      G     
Stem-loop sequence UAGGGUUUAGGGUUUAAGGUUUAGGGUUUAGGGUUUAGGGUUUAGGGUUUAGGGUUUAGGGUUUAGAGGGUUUAGGGUUUAGGGUUUAGGGUUUAGGGUUUAGGGUUUAGGGUUUAGGGUUUAGGGUUUAGGGUUUAGGGUUUAGGGUUUAGGGUUUAGGGUUUAGGGUUUAGGGUUUAGGGUUUAGGGUUUAGGGUUUAGGGUUUAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003543160.3
ncRNA:20   UGGAAUUUGGGAUUUGGGAU   1
  =|||||||||||||||||*|
targets:27   GCCUUAAACCCUAAACCCAA   46

1.5 PREDICTED: Glycine max cytochrome c oxidase assembly factor 5 (LOC100500616), mRNA cytochrome c oxidase assembly factor 5(LOC100500616) coding protein psRNATarget
XM_006602058.2
ncRNA:20   UGGA-AUUUGGGAUUUGGGAU   1
  *|||-||||||||||||||||
targets:15   CCCUGUAAACCCUAAACCCUA   35

2.0 PREDICTED: Glycine max probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase (LOC100807160), mRNA probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase(LOC100807160) coding protein psRNATarget
XM_006605735.2
ncRNA:20   UGGAAUUUGGGAUUUGGGAU   1
  |*|*||||||||||||||||
targets:99   AGCAUAAACCCUAAACCCUA   118

2.0 PREDICTED: Glycine max rhodanese-like domain-containing protein 6 (LOC100786152), mRNA rhodanese-like domain-containing protein 6(LOC100786152) coding protein psRNATarget
XM_003553675.3
ncRNA:20   UGGAAUUUGGGAUUUGGGAU   1
  *||*|||||||||||||||*
targets:392   UCCCUAAACCCUAAACCCUC   411

2.0 PREDICTED: Glycine max uncharacterized LOC100807006 (LOC100807006), mRNA uncharacterized LOC100807006(LOC100807006) coding protein psRNATarget
XM_006577175.2
ncRNA:20   UGGAAUUUGGGAUUUGGGAU   1
  *||*|||||||||||||||*
targets:305   UCCCUAAACCCUAAACCCUC   324

2.0 PREDICTED: Glycine max uncharacterized LOC102669955 (LOC102669955), mRNA uncharacterized LOC102669955(LOC102669955) coding protein psRNATarget
XM_006589047.2
ncRNA:20   UGGAAUUUGGGAUUUGGGAU   1
  **|*||||||||||||||||
targets:141   UGCAUAAACCCUAAACCCUA   160

2.0 PREDICTED: Glycine max rhodanese-like domain-containing protein 6 (LOC100799148), mRNA rhodanese-like domain-containing protein 6(LOC100799148) coding protein psRNATarget
XM_003519432.3
ncRNA:20   UGGAAUUUGGGAUUUGGGAU   1
  ||||*|||*|||||||||||
targets:184   ACCUCAAAACCUAAACCCUA   203

2.5 PREDICTED: Glycine max geranylgeranyl diphosphate reductase, chloroplastic-like (LOC100787525), mRNA geranylgeranyl diphosphate reductase, chloroplastic-like(LOC100787525) coding protein psRNATarget
XM_014779330.1
ncRNA:20   UGGAAUUUGGGAUUUGGGAU   1
  =|||*|||||||||||||*|
targets:49   GCCUAAAACCCUAAACCCCA   68

2.5 PREDICTED: Glycine max DEAD-box ATP-dependent RNA helicase 22-like (LOC100780518), transcript variant X2, mRNA DEAD-box ATP-dependent RNA helicase 22-like(LOC100780518) coding protein psRNATarget
XM_014779329.1
ncRNA:20   UGGAAUUUGGGAUUUGGGAU   1
  =|||*|||||||||||||*|
targets:49   GCCUAAAACCCUAAACCCCA   68

2.5 PREDICTED: Glycine max DEAD-box ATP-dependent RNA helicase 22-like (LOC100780518), transcript variant X1, mRNA DEAD-box ATP-dependent RNA helicase 22-like(LOC100780518) coding protein psRNATarget
XM_006585914.2
ncRNA:20   UGGAAUUUGGGAUUUGGGAU   1
  =|||*|||||||||||||*|
targets:49   GCCUAAAACCCUAAACCCCA   68

2.5 PREDICTED: Glycine max DEAD-box ATP-dependent RNA helicase 22-like (LOC100780518), transcript variant X3, mRNA DEAD-box ATP-dependent RNA helicase 22-like(LOC100780518) coding protein psRNATarget
XM_003530613.3
ncRNA:20   UGGAAUUUGGGAUUUGGGAU   1
  =|||*|||||||||||||*|
targets:42   GCCUAAAACCCUAAACCCCA   61

2.5 PREDICTED: Glycine max DEAD-box ATP-dependent RNA helicase 22-like (LOC100780518), transcript variant X4, mRNA DEAD-box ATP-dependent RNA helicase 22-like(LOC100780518) coding protein psRNATarget
XM_003553180.3
ncRNA:20   UGGAAUUUGGGAUUUGGGAU   1
  =|||*|||||||||||||*|
targets:21   GCCUAAAACCCUAAACCCCA   40

2.5 PREDICTED: Glycine max DEAD-box ATP-dependent RNA helicase 22-like (LOC100789323), mRNA DEAD-box ATP-dependent RNA helicase 22-like(LOC100789323) coding protein psRNATarget
XM_003551684.3
ncRNA:20   UGGAAUUUGGGAUUUGGGAU   1
  *|||*||||*||||||||||
targets:138   CCCUAAAACACUAAACCCUA   157

2.5 PREDICTED: Glycine max cell division protein FtsZ homolog 1, chloroplastic-like (LOC100786112), mRNA cell division protein FtsZ homolog 1, chloroplastic-like(LOC100786112) coding protein psRNATarget
XM_003516526.3
ncRNA:20   UGGAAUUUGGGAUUUGGGAU   1
  *||*||||||||||||||*|
targets:17   CCCAUAAACCCUAAACCCAA   36

2.5 PREDICTED: Glycine max nucleolar protein 6-like (LOC100779287), mRNA nucleolar protein 6-like(LOC100779287) coding protein psRNATarget
XM_003537540.3
ncRNA:20   UGGAAUUUGGGAUUUGGGAU   1
  *||*||||||||||||||*|
targets:17   CCCAUAAACCCUAAACCCAA   36

2.5 PREDICTED: Glycine max nucleolar protein 6-like (LOC100776157), transcript variant X1, mRNA nucleolar protein 6-like(LOC100776157) coding protein psRNATarget
XM_006590625.2
ncRNA:20   UGGAAUUUGGGAUUUGGGAU   1
  *||*||||||||||||||*|
targets:17   CCCAUAAACCCUAAACCCAA   36

2.5 PREDICTED: Glycine max nucleolar protein 6-like (LOC100776157), transcript variant X2, mRNA nucleolar protein 6-like(LOC100776157) coding protein psRNATarget
XM_006577704.2
ncRNA:20   UGGAAUUUGGGAUUUGGGAU   1
  *=|||*|||||||||||||*
targets:33   CUCUUCAACCCUAAACCCUC   52

3.0 PREDICTED: Glycine max uncharacterized LOC100306274 (LOC100306274), transcript variant X1, mRNA uncharacterized LOC100306274(LOC100306274) coding protein psRNATarget
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