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BaseInfo

ncRNA ID novel_gma_miR3658
Species Glycine max
Class miRNA
Genome position Chr11:31790397-31790558 [+]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 21
Mature sequence(if miRNA) 142 - AGUGUGUUGCUAGCACUCCUC - 162
Stem-loop(if miRNA) --GAAA           A      UU  A     U  G                  C      A C         AA  UG
      UGUUAGCAACA AUUCUU  CA CACAU CU UGUUAUUGGUUGAAAUUU UUGGAA U AUAAAAUAA  UG  G
      ||||||||||| ||||||  || ||||| || |||||||||||||||||| |||||| | |||||||||  ||  G
      ACGAUCGUUGU UGAGAA  GU GUGUG GA AUAAUAACCAACUUUAAA AACUUU A UGUUUUAUU  AC  U
CUCCUC           G      UU  -     U  A                  U      C A         CA  UC
Stem-loop sequence GAAAUGUUAGCAACAAAUUCUUUUCAACACAUUCUGUGUUAUUGGUUGAAAUUUCUUGGAAAUCAUAAAAUAAAAUGUGGGUCUCAACUUAUUUUGUAACUUUCAAUAAAUUUCAACCAAUAAUAAAGUGUGUGUGUUAAGAGUGUGUUGCUAGCACUCCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014778180.1
ncRNA:21   CUCCUCACGAUCGUUGUGUGA   1
  |||||||||||||||||||||
targets:1097   GAGGAGUGCUAGCAACACACU   1117

0.0 PREDICTED: Glycine max glutathionyl-hydroquinone reductase YqjG-like (LOC100796611), transcript variant X3, mRNA glutathionyl-hydroquinone reductase YqjG-like(LOC100796611) coding protein psRNATarget
XM_006583865.2
ncRNA:21   CUCCUCACGAUCGUUGUGUGA   1
  |||||||||||||||||||||
targets:1102   GAGGAGUGCUAGCAACACACU   1122

0.0 PREDICTED: Glycine max glutathionyl-hydroquinone reductase YqjG-like (LOC100796611), transcript variant X6, mRNA glutathionyl-hydroquinone reductase YqjG-like(LOC100796611) coding protein psRNATarget
XM_014778182.1
ncRNA:21   CUCCUCACGAUCGUUGUGUGA   1
  |||||||||||||||||||||
targets:1103   GAGGAGUGCUAGCAACACACU   1123

0.0 PREDICTED: Glycine max glutathionyl-hydroquinone reductase YqjG-like (LOC100796611), transcript variant X4, mRNA glutathionyl-hydroquinone reductase YqjG-like(LOC100796611) coding protein psRNATarget
XM_006583864.2
ncRNA:21   CUCCUCACGAUCGUUGUGUGA   1
  |||||||||||||||||||||
targets:1109   GAGGAGUGCUAGCAACACACU   1129

0.0 PREDICTED: Glycine max glutathionyl-hydroquinone reductase YqjG-like (LOC100796611), transcript variant X5, mRNA glutathionyl-hydroquinone reductase YqjG-like(LOC100796611) coding protein psRNATarget
XM_003529383.3
ncRNA:21   CUCCUCACGAUCGUUGUGUGA   1
  |||||||||||||||||||||
targets:1146   GAGGAGUGCUAGCAACACACU   1166

0.0 PREDICTED: Glycine max glutathionyl-hydroquinone reductase YqjG-like (LOC100796611), transcript variant X1, mRNA glutathionyl-hydroquinone reductase YqjG-like(LOC100796611) coding protein psRNATarget
XM_006583866.2
ncRNA:21   CUCCUCACGAUCGUUGUGUGA   1
  |||||||||||||||||||||
targets:1163   GAGGAGUGCUAGCAACACACU   1183

0.0 PREDICTED: Glycine max glutathionyl-hydroquinone reductase YqjG-like (LOC100796611), transcript variant X2, mRNA glutathionyl-hydroquinone reductase YqjG-like(LOC100796611) coding protein psRNATarget
XM_006597492.2
ncRNA:21   CUCCUCACGAUCGUUGUGUGA   1
  *||||||||||||||||||||
targets:1683   CAGGAGUGCUAGCAACACACU   1703

0.0 PREDICTED: Glycine max probable protein phosphatase 2C 35 (LOC100777670), transcript variant X2, mRNA probable protein phosphatase 2C 35(LOC100777670) coding protein psRNATarget
XM_006597495.2
ncRNA:21   CUCCUCACGAUCGUUGUGUGA   1
  *||||||||||||||||||||
targets:1933   CAGGAGUGCUAGCAACACACU   1953

0.0 PREDICTED: Glycine max probable protein phosphatase 2C 35 (LOC100777670), transcript variant X5, mRNA probable protein phosphatase 2C 35(LOC100777670) coding protein psRNATarget
XM_006597491.2
ncRNA:21   CUCCUCACGAUCGUUGUGUGA   1
  *||||||||||||||||||||
targets:1933   CAGGAGUGCUAGCAACACACU   1953

0.0 PREDICTED: Glycine max probable protein phosphatase 2C 35 (LOC100777670), transcript variant X1, mRNA probable protein phosphatase 2C 35(LOC100777670) coding protein psRNATarget
XM_006597494.2
ncRNA:21   CUCCUCACGAUCGUUGUGUGA   1
  *||||||||||||||||||||
targets:1933   CAGGAGUGCUAGCAACACACU   1953

0.0 PREDICTED: Glycine max probable protein phosphatase 2C 35 (LOC100777670), transcript variant X4, mRNA probable protein phosphatase 2C 35(LOC100777670) coding protein psRNATarget
XM_006597493.2
ncRNA:21   CUCCUCACGAUCGUUGUGUGA   1
  *||||||||||||||||||||
targets:1933   CAGGAGUGCUAGCAACACACU   1953

0.0 PREDICTED: Glycine max probable protein phosphatase 2C 35 (LOC100777670), transcript variant X3, mRNA probable protein phosphatase 2C 35(LOC100777670) coding protein psRNATarget
XM_014765052.1
ncRNA:21   CUCCUCACGAUCGUUGUGUGA   1
  ||||||||||||||||||||*
targets:1697   GAGGAGUGCUAGCAACACACA   1717

1.0 PREDICTED: Glycine max DNA-(apurinic or apyrimidinic site) lyase 2 (LOC100781120), transcript variant X2, mRNA DNA-(apurinic or apyrimidinic site) lyase 2(LOC100781120) coding protein psRNATarget
XM_014765049.1
ncRNA:21   CUCCUCACGAUCGUUGUGUGA   1
  ||||||||||||||||||||*
targets:1818   GAGGAGUGCUAGCAACACACA   1838

1.0 PREDICTED: Glycine max DNA-(apurinic or apyrimidinic site) lyase 2 (LOC100781120), transcript variant X1, mRNA DNA-(apurinic or apyrimidinic site) lyase 2(LOC100781120) coding protein psRNATarget
XM_014774933.1
ncRNA:21   CUCCUCACGAUCGUUGUGUGA   1
  |||||||||||||||=|||||
targets:2128   GAGGAGUGCUAGCAAUACACU   2148

1.5 PREDICTED: Glycine max oligopeptide transporter 9-like (LOC100806644), transcript variant X2, mRNA oligopeptide transporter 9-like(LOC100806644) coding protein psRNATarget
XM_003522491.3
ncRNA:21   CUCCUCACGAUCGUUGUGUGA   1
  |||||||||||||||=|||||
targets:2352   GAGGAGUGCUAGCAAUACACU   2372

1.5 PREDICTED: Glycine max oligopeptide transporter 9-like (LOC100806644), transcript variant X1, mRNA oligopeptide transporter 9-like(LOC100806644) coding protein psRNATarget
XM_003518860.3
ncRNA:21   CUCCUCACGAUCGUUGUGUGA   1
  |||*|*|||||||||||||||
targets:2435   GAGAAAUGCUAGCAACACACU   2455

2.0 PREDICTED: Glycine max sulfate transporter 3.1-like (LOC100787694), mRNA sulfate transporter 3.1-like(LOC100787694) coding protein psRNATarget
XM_006585634.2
ncRNA:21   CUCCUCACGAUCGUUGUGUGA   1
  *|*|||||||||||||||||*
targets:1861   UAAGAGUGCUAGCAACACACA   1881

2.0 PREDICTED: Glycine max uncharacterized LOC100790310 (LOC100790310), mRNA uncharacterized LOC100790310(LOC100790310) coding protein psRNATarget
XM_006597880.2
ncRNA:21   CUCCUCACGAUCGUUGUGUGA   1
  |||*|||||||||||=|||||
targets:542   GAGAAGUGCUAGCAAUACACU   562

2.5 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 23-like (LOC100788366), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 23-like(LOC100788366) coding protein psRNATarget
XM_006597879.2
ncRNA:21   CUCCUCACGAUCGUUGUGUGA   1
  |||*|||||||||||=|||||
targets:539   GAGAAGUGCUAGCAAUACACU   559

2.5 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 23-like (LOC100788366), transcript variant X1, mRNA CBL-interacting serine/threonine-protein kinase 23-like(LOC100788366) coding protein psRNATarget
XM_003550276.3
ncRNA:21   CUCCUCACGAUCGUUGUGUGA   1
  |||*|**||||||||||||||
targets:1237   GAGAACCGCUAGCAACACACU   1257

3.0 PREDICTED: Glycine max uncharacterized LOC100807289 (LOC100807289), mRNA uncharacterized LOC100807289(LOC100807289) coding protein psRNATarget
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