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BaseInfo

ncRNA ID	novel_gma_miR3656
Species	Glycine max
Class	miRNA
Genome position	Chr1:11764274-11764360 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451676
Length	20
Mature sequence(if miRNA)	1 - AGGGUUUUCUUUUUCUUUUU - 20
Stem-loop(if miRNA)	GAAGAAAAG     G  GCUAGAAGUUUCUGAAGAAGGAGAGAGAAG          GGAAG CU                              A          ||||| ||                              U          UUUUU CU                              U ---------     -  UUUUCUUUUGGGAAAAAAAAUUUUUUCGGU
Stem-loop sequence	GAAGAAAAGGGAAGGCUGCUAGAAGUUUCUGAAGAAGGAGAGAGAAGAUUUGGCUUUUUUAAAAAAAAGGGUUUUCUUUUUCUUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014774808.1	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   |=|||||||||||||||||| targets:372   AGAAAGAAAAAGAAAACCCU   391 Target Full Sequence	1.0	PREDICTED: Glycine max tetratricopeptide repeat protein 37-like (LOC100820184), transcript variant X3, mRNA	tetratricopeptide repeat protein 37-like(LOC100820184)	coding protein	psRNATarget
XM_014774809.1	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   |=|||||||||||||||||| targets:372   AGAAAGAAAAAGAAAACCCU   391 Target Full Sequence	1.0	PREDICTED: Glycine max tetratricopeptide repeat protein 37-like (LOC100820184), transcript variant X4, mRNA	tetratricopeptide repeat protein 37-like(LOC100820184)	coding protein	psRNATarget
XM_006578612.2	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   |=|||||||||||||||||| targets:265   AGAAAGAAAAAGAAAACCCU   284 Target Full Sequence	1.0	PREDICTED: Glycine max tetratricopeptide repeat protein 37-like (LOC100820184), transcript variant X1, mRNA	tetratricopeptide repeat protein 37-like(LOC100820184)	coding protein	psRNATarget
XM_003526932.3	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   |=|||||||||||||||||| targets:17   AGAAAGAAAAAGAAAACCCU   36 Target Full Sequence	1.0	PREDICTED: Glycine max probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY (LOC100786537), transcript variant X1, mRNA	probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY(LOC100786537)	coding protein	psRNATarget
XM_006581829.2	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   |=|||||||||||||||||| targets:17   AGAAAGAAAAAGAAAACCCU   36 Target Full Sequence	1.0	PREDICTED: Glycine max probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY (LOC100786537), transcript variant X2, mRNA	probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY(LOC100786537)	coding protein	psRNATarget
XM_006585657.2	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   =|||||=||||||||||||| targets:140   GAAAAGGAAAAGAAAACCCU   159 Target Full Sequence	1.0	PREDICTED: Glycine max protein strawberry notch-like (LOC100804594), transcript variant X1, mRNA	protein strawberry notch-like(LOC100804594)	coding protein	psRNATarget
XM_014779205.1	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   =|||||=||||||||||||| targets:140   GAAAAGGAAAAGAAAACCCU   159 Target Full Sequence	1.0	PREDICTED: Glycine max protein strawberry notch-like (LOC100804594), transcript variant X2, mRNA	protein strawberry notch-like(LOC100804594)	coding protein	psRNATarget
XM_003530249.3	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   ||||*||||||||||||||| targets:243   AAAACGAAAAAGAAAACCCU   262 Target Full Sequence	1.0	PREDICTED: Glycine max probable CCR4-associated factor 1 homolog 7 (LOC100789409), transcript variant X1, mRNA	probable CCR4-associated factor 1 homolog 7(LOC100789409)	coding protein	psRNATarget
XM_003530250.3	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   ||||*||||||||||||||| targets:244   AAAACGAAAAAGAAAACCCU   263 Target Full Sequence	1.0	PREDICTED: Glycine max probable CCR4-associated factor 1 homolog 7 (LOC100789409), transcript variant X2, mRNA	probable CCR4-associated factor 1 homolog 7(LOC100789409)	coding protein	psRNATarget
XM_006585548.2	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   ||||*||||||||||||||| targets:96   AAAACGAAAAAGAAAACCCU   115 Target Full Sequence	1.0	PREDICTED: Glycine max probable CCR4-associated factor 1 homolog 7 (LOC100799461), transcript variant X1, mRNA	probable CCR4-associated factor 1 homolog 7(LOC100799461)	coding protein	psRNATarget
XM_006604542.2	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   |||||||||||||||=|||| targets:1346   AAAAAGAAAAAGAAAGCCCU   1365 Target Full Sequence	1.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase UPL7 (LOC100527169), transcript variant X2, mRNA	E3 ubiquitin-protein ligase UPL7(LOC100527169)	coding protein	psRNATarget
XM_006604543.2	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   |||||||||||||||=|||| targets:1346   AAAAAGAAAAAGAAAGCCCU   1365 Target Full Sequence	1.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase UPL7 (LOC100527169), transcript variant X3, mRNA	E3 ubiquitin-protein ligase UPL7(LOC100527169)	coding protein	psRNATarget
XM_006604541.2	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   |||||||||||||||=|||| targets:1346   AAAAAGAAAAAGAAAGCCCU   1365 Target Full Sequence	1.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase UPL7 (LOC100527169), transcript variant X1, mRNA	E3 ubiquitin-protein ligase UPL7(LOC100527169)	coding protein	psRNATarget
XM_003553526.3	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   |||||||||||||||=|||| targets:1346   AAAAAGAAAAAGAAAGCCCU   1365 Target Full Sequence	1.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase UPL7 (LOC100527169), transcript variant X4, mRNA	E3 ubiquitin-protein ligase UPL7(LOC100527169)	coding protein	psRNATarget
AK287288.1	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   =|||||||||||=||||||| targets:5   GAAAAGAAAAAGGAAACCCU   24 Target Full Sequence	1.5	Glycine max cDNA, clone: GMFL01-48-O24	NA	coding protein	psRNATarget
BT089870.1	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   =|||||||||||=||||||| targets:5   GAAAAGAAAAAGGAAACCCU   24 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-3E3 unknown mRNA	NA	coding protein	psRNATarget
NM_001249052.2	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   =|||||||||||=||||||| targets:4   GAAAAGAAAAAGGAAACCCU   23 Target Full Sequence	1.5	Glycine max uncharacterized LOC100305991 (LOC100305991), mRNA	uncharacterized LOC100305991(LOC100305991)	coding protein	psRNATarget
XM_003531576.3	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   |||||||||||*|||||||| targets:134   AAAAAGAAAAACAAAACCCU   153 Target Full Sequence	1.5	PREDICTED: Glycine max DNA replication complex GINS protein SLD5-like (LOC100784291), mRNA	DNA replication complex GINS protein SLD5-like(LOC100784291)	coding protein	psRNATarget
XM_003519288.3	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   |||||||||||*|||||||| targets:38   AAAAAGAAAAAAAAAACCCU   57 Target Full Sequence	1.5	PREDICTED: Glycine max probable calcium-binding protein CML18 (LOC100796491), mRNA	probable calcium-binding protein CML18(LOC100796491)	coding protein	psRNATarget
XM_014774085.1	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   |=||||||||||||||=||| targets:1520   AGAAAGAAAAAGAAAAUCCU   1539 Target Full Sequence	2.5	PREDICTED: Glycine max serine/threonine-protein kinase prpf4B-like (LOC100814081), transcript variant X2, mRNA	serine/threonine-protein kinase prpf4B-like(LOC100814081)	coding protein	psRNATarget
XM_014774080.1	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   |=||||||||||||||=||| targets:1517   AGAAAGAAAAAGAAAAUCCU   1536 Target Full Sequence	2.5	PREDICTED: Glycine max serine/threonine-protein kinase prpf4B-like (LOC100814081), transcript variant X1, mRNA	serine/threonine-protein kinase prpf4B-like(LOC100814081)	coding protein	psRNATarget
XM_003538056.3	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   ||||||||||||||||=||* targets:33   AAAAAGAAAAAGAAAAUCCA   52 Target Full Sequence	2.5	PREDICTED: Glycine max nicalin-1 (LOC100779713), mRNA	nicalin-1(LOC100779713)	coding protein	psRNATarget
BT093265.1	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   |||||||||||||=|||||* targets:86   AAAAAGAAAAAGAGAACCCA   105 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-14C9 unknown mRNA	NA	coding protein	psRNATarget
NM_001255867.2	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   |||||||||||||=|||||* targets:84   AAAAAGAAAAAGAGAACCCA   103 Target Full Sequence	2.5	Glycine max glucan endo-1,3-beta-glucosidase-like protein 2-like (LOC100779749), mRNA	glucan endo-1,3-beta-glucosidase-like protein 2-like(LOC100779749)	coding protein	psRNATarget
XM_014773889.1	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   ||||=||||||||||*|||| targets:1473   AAAAGGAAAAAGAAAUCCCU   1492 Target Full Sequence	2.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase UPL7-like (LOC100805744), transcript variant X1, mRNA	E3 ubiquitin-protein ligase UPL7-like(LOC100805744)	coding protein	psRNATarget
XM_014773890.1	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   ||||=||||||||||*|||| targets:893   AAAAGGAAAAAGAAAUCCCU   912 Target Full Sequence	2.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase UPL7-like (LOC100805744), transcript variant X2, mRNA	E3 ubiquitin-protein ligase UPL7-like(LOC100805744)	coding protein	psRNATarget
XM_014773891.1	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   ||||=||||||||||*|||| targets:883   AAAAGGAAAAAGAAAUCCCU   902 Target Full Sequence	2.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase UPL7-like (LOC100805744), transcript variant X3, mRNA	E3 ubiquitin-protein ligase UPL7-like(LOC100805744)	coding protein	psRNATarget
XM_006581270.2	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   ||||=||||||*|||||||| targets:136   AAAAGGAAAAAAAAAACCCU   155 Target Full Sequence	2.5	PREDICTED: Glycine max muscle M-line assembly protein unc-89-like (LOC100781036), transcript variant X1, mRNA	muscle M-line assembly protein unc-89-like(LOC100781036)	coding protein	psRNATarget
XM_003527729.3	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   ||||=||||||*|||||||| targets:134   AAAAGGAAAAAAAAAACCCU   153 Target Full Sequence	2.5	PREDICTED: Glycine max muscle M-line assembly protein unc-89-like (LOC100781036), transcript variant X3, mRNA	muscle M-line assembly protein unc-89-like(LOC100781036)	coding protein	psRNATarget
XM_014773892.1	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   ||||=||||||||||*|||| targets:379   AAAAGGAAAAAGAAAUCCCU   398 Target Full Sequence	2.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase UPL7-like (LOC100805744), transcript variant X4, mRNA	E3 ubiquitin-protein ligase UPL7-like(LOC100805744)	coding protein	psRNATarget
XM_014775205.1	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   |=|||||||||*|||||||| targets:80   AGAAAGAAAAAAAAAACCCU   99 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100791625 (LOC100791625), mRNA	uncharacterized LOC100791625(LOC100791625)	coding protein	psRNATarget
XM_006594602.2	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   |||||*|||||||||||=|| targets:2525   AAAAAAAAAAAGAAAACUCU   2544 Target Full Sequence	2.5	PREDICTED: Glycine max KH domain-containing protein At4g18375-like (LOC100816819), transcript variant X1, mRNA	KH domain-containing protein At4g18375-like(LOC100816819)	coding protein	psRNATarget
XM_006594603.2	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   |||||*|||||||||||=|| targets:2522   AAAAAAAAAAAGAAAACUCU   2541 Target Full Sequence	2.5	PREDICTED: Glycine max KH domain-containing protein At4g18375-like (LOC100816819), transcript variant X2, mRNA	KH domain-containing protein At4g18375-like(LOC100816819)	coding protein	psRNATarget
XM_003550190.3	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   |=|||||||||*|||||||| targets:52   AGAAAGAAAAAAAAAACCCU   71 Target Full Sequence	2.5	PREDICTED: Glycine max probable monogalactosyldiacylglycerol synthase, chloroplastic (LOC100804814), mRNA	probable monogalactosyldiacylglycerol synthase, chloroplastic(LOC100804814)	coding protein	psRNATarget
XM_003542616.3	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   ||=|||||||||||||*||| targets:601   AAGAAGAAAAAGAAAAGCCU   620 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100780479 (LOC100780479), mRNA	uncharacterized LOC100780479(LOC100780479)	coding protein	psRNATarget
XM_006575349.2	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   |||||||||||||||||*|* targets:88   AAAAAGAAAAAGAAAACACA   107 Target Full Sequence	2.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g19720-like (LOC102663842), mRNA	pentatricopeptide repeat-containing protein At1g19720-like(LOC102663842)	coding protein	psRNATarget
XM_003539583.3	ncRNA:20   UUUUUCUUUUUCUUUU-GGGA   1   ||||||||||||||||-|||| targets:50   AAAAAGAAAAAGAAAAACCCU   70 Target Full Sequence	3.0	PREDICTED: Glycine max nuclear pore complex protein NUP98A-like (LOC100789177), mRNA	nuclear pore complex protein NUP98A-like(LOC100789177)	coding protein	psRNATarget
BT092755.1	ncRNA:20   UUUUUCUU-UUUCUUUUGGGA   1   ||||||||-|||||||||||| targets:116   AAAAAGAAUAAAGAAAACCCU   136 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-11N21 unknown mRNA	NA	coding protein	psRNATarget
XM_014772545.1	ncRNA:20   UUUUU---CUUUUUCUUUUGGGA   1   |||||---||||||||||||||| targets:14   AAAAAUAGGAAAAAGAAAACCCU   36 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100783153 (LOC100783153), mRNA	uncharacterized LOC100783153(LOC100783153)	coding protein	psRNATarget
XM_003519131.3	ncRNA:20   UU-UUUCUUUUUCUUUUGGGA   1   ||-||||=||||||||||||| targets:2048   AAUAAAGGAAAAGAAAACCCU   2068 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized protein At1g04910-like (LOC100800040), transcript variant X1, mRNA	uncharacterized protein At1g04910-like(LOC100800040)	coding protein	psRNATarget
XM_014768689.1	ncRNA:20   UU-UUUCUUUUUCUUUUGGGA   1   ||-||||=||||||||||||| targets:1950   AAUAAAGGAAAAGAAAACCCU   1970 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized protein At1g04910-like (LOC100800040), transcript variant X2, mRNA	uncharacterized protein At1g04910-like(LOC100800040)	coding protein	psRNATarget
XM_003538347.3	ncRNA:20   UUUUUC-UUUUUCUUUUGGGA   1   ||||||-|||||||||||||* targets:2114   AAAAAGUAAAAAGAAAACCCA   2134 Target Full Sequence	3.0	PREDICTED: Glycine max DELLA protein GAI 2 (GAI2), mRNA	DELLA protein GAI 2(GAI2)	coding protein	psRNATarget
XM_006596288.2	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   ==||||=||||||||||||* targets:2014   GGAAAGGAAAAGAAAACCCA   2033 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized protein At1g04910-like (LOC100795727), transcript variant X1, mRNA	uncharacterized protein At1g04910-like(LOC100795727)	coding protein	psRNATarget
XM_006596289.2	ncRNA:20   UUUUUCUUUUUCUUUUGGGA   1   ==||||=||||||||||||* targets:1982   GGAAAGGAAAAGAAAACCCA   2001 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized protein At1g04910-like (LOC100795727), transcript variant X2, mRNA	uncharacterized protein At1g04910-like(LOC100795727)	coding protein	psRNATarget