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BaseInfo

ncRNA ID novel_gma_miR3654
Species Glycine max
Class miRNA
Genome position Chr11:26380771-26380877 [+]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 1 - AUCUGUAUAACUCAUACGGA - 20
Stem-loop(if miRNA) --        A               G     C     AACUC   C     A
  AUCUGUAU ACUCAUACGGAUCAA UUGAU CGUAU     AUA GGAUC A
  |||||||| ||||||||||||||| ||||| |||||     ||| ||||| C
  UAGACGUA UGAGUAUGUCUAGUU AACUA GCAUA     UAU CCUAG U
UC        A               G     A     CUCAA   U     A
Stem-loop sequence AUCUGUAUAACUCAUACGGAUCAAGUUGAUCCGUAUAACUCAUACGGAUCAACUAGAUCCUUAUAACUCAUACGAAUCAAGUUGAUCUGUAUGAGUAAUGCAGAUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014768839.1
ncRNA:20   AGGCAUACUCAAUAUGUCUA   1
  *||*|=*|||||||||||||
targets:4158   CCCAUGGGAGUUAUACAGAU   4177

3.0 PREDICTED: Glycine max protein TSS-like (LOC100784117), transcript variant X2, mRNA protein TSS-like(LOC100784117) coding protein psRNATarget
XM_014768838.1
ncRNA:20   AGGCAUACUCAAUAUGUCUA   1
  *||*|=*|||||||||||||
targets:4158   CCCAUGGGAGUUAUACAGAU   4177

3.0 PREDICTED: Glycine max protein TSS-like (LOC100784117), transcript variant X1, mRNA protein TSS-like(LOC100784117) coding protein psRNATarget
XM_006598840.2
ncRNA:20   AGGCAUACUCAAUAUGUCUA   1
  *||*|=*|||||||||||||
targets:4195   CCCAUGGGAGUUAUACAGAU   4214

3.0 PREDICTED: Glycine max protein TSS-like (LOC100784117), transcript variant X3, mRNA protein TSS-like(LOC100784117) coding protein psRNATarget