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BaseInfo

ncRNA ID novel_gma_miR3651
Species Glycine max
Class miRNA
Genome position Chr10:45526809-45526886 [-]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 59 - AUAUUCUUGAUCUGUAAUUU - 78
Stem-loop(if miRNA) --A      UGAUC   AAUUUU   -U         --  G
   UAUUCU     UGU      UUC  ACCUUGUAG  AG A
   ||||||     |||      |||  |||||||||  ||
   AUAGGA     ACA      AAG  UGGGGCAUU  UC G
GUC      ---UC   GAAUUU   CC         UG  A
Stem-loop sequence AUAUUCUUGAUCUGUAAUUUUUUCUACCUUGUAGAGGAGACUGUUUACGGGGUCCGAAUUUAAGACACUAGGAUACUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014774204.1
ncRNA:20   UUUAAUGUCUAGUUCUUAUA   1
  *|||||=|||||||||||||
targets:1077   UAAUUAUAGAUCAAGAAUAU   1096

1.0 PREDICTED: Glycine max probable polygalacturonase At3g15720 (LOC100820332), mRNA probable polygalacturonase At3g15720(LOC100820332) coding protein psRNATarget
XM_014774203.1
ncRNA:20   UUUAAUGUCUAGUUCUUAUA   1
  *|||||=|||||||||=|||
targets:1058   UAAUUAUAGAUCAAGAGUAU   1077

2.5 PREDICTED: Glycine max probable polygalacturonase At3g15720 (LOC100818729), mRNA probable polygalacturonase At3g15720(LOC100818729) coding protein psRNATarget
XM_003546460.3
ncRNA:20   UUUAAUGUCUAGUUCUUAUA   1
  =|||||||||||||*||||*
targets:1860   GAAUUACAGAUCAACAAUAC   1879

2.5 PREDICTED: Glycine max tubulin--tyrosine ligase-like protein 12 (LOC100809212), mRNA tubulin--tyrosine ligase-like protein 12(LOC100809212) coding protein psRNATarget