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BaseInfo

ncRNA ID novel_gma_miR3642
Species Glycine max
Class miRNA
Genome position Chr9:1941220-1941304 [-]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 66 - UUCGAAUCGGAUUGGUAACA - 85
Stem-loop(if miRNA) --         GA       CAA G           GUAG   U
  UUCGAAUCG  UUGGUAA   G AAUUUAUGUGU    GUG G
  |||||||||  |||||||   | |||||||||||    |||
  AAGUUUAGU  GAUCGUU   U UUGAAUAUAUA    UAU U
UC         UC       -CG G           --AA   G
Stem-loop sequence UUCGAAUCGGAUUGGUAACAAGGAAUUUAUGUGUGUAGGUGUGUGUAUAAAUAUAUAAGUUGUGCUUGCUAGCUUGAUUUGAACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006601870.2
ncRNA:20   ACAAUGGUUAGGCUAAGCUU   1
  *||||=|||||||||*||||
targets:8084   CGUUAUCAAUCCGAUGCGAA   8103

2.5 PREDICTED: Glycine max small subunit processome component 20 homolog (LOC100811612), mRNA small subunit processome component 20 homolog(LOC100811612) coding protein psRNATarget