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BaseInfo

ncRNA ID	novel_gma_miR3628
Species	Glycine max
Class	miRNA
Genome position	Chr8:29937697-29937920 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451676
Length	19
Mature sequence(if miRNA)	206 - UUUAGAAGCACUUCUAAGA - 224
Stem-loop(if miRNA)	--             C  A        AAAACAAGAA     U   U      GU  C               G    CUC     A  A         A CU       ---A   C   UUUAGAAGCACUU UA GAGGAAAA          GAAAA AAU AGAUGA  UU UCCAUAAGUUAAAAU AGUU   CAUUA CU AUUUGUAGA G  CUCUCAU    UAG U   ||||||||||||| || ||||||||          ||||| ||| ||||||  || ||||||||||||||| ||||   ||||| || ||||||||| |  |||||||    ||| U   AGAUCUUCGUGAA AU CUCUUUUU          CUUUU UUA UUUAUU  AA AGGUAUUCGAUUUUA UCGA   GUAAU GA UAAACAUCU C  GAGAGUA    AUC C AG             U  C        ---------G     -   C      UG  A               A    UUA     C  A         A AU       GAAA   U
Stem-loop sequence	UUUAGAAGCACUUCUAAGAGGAAAAAAAACAAGAAGAAAAUAAUUAGAUGAGUUUCUCCAUAAGUUAAAAUGAGUUCUCCAUUAACUAAUUUGUAGAAGCUCUCUCAUAUAGCUUCUCUAAAAGAUGAGAGUACAUCUACAAAUAAGCUAAUGAUUAGCUAAUUUUAGCUUAUGGAAAAGUUUAUUUCAUUUUUUCGUUUUUCUCCUAUAAGUGCUUCUAGAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006594197.2	ncRNA:19   AGAAUCUUCACGAAGAUUU   1   |=||||||||||||||||| targets:936   UUUUAGAAGUGCUUCUAAA   954 Target Full Sequence	1.0	PREDICTED: Glycine max probable anion transporter 6, chloroplastic (LOC100806856), transcript variant X2, mRNA	probable anion transporter 6, chloroplastic(LOC100806856)	coding protein	psRNATarget
XM_003541440.3	ncRNA:19   AGAAUCUUCACGAAGAUUU   1   |=||||||||||||||||| targets:936   UUUUAGAAGUGCUUCUAAA   954 Target Full Sequence	1.0	PREDICTED: Glycine max probable anion transporter 6, chloroplastic (LOC100806856), transcript variant X1, mRNA	probable anion transporter 6, chloroplastic(LOC100806856)	coding protein	psRNATarget
XM_014763080.1	ncRNA:19   AGAAUCUUCACGAAGAUUU   1   |||||||||||=||||||| targets:3722   UCUUAGAAGUGUUUCUAAA   3740 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g49740-like (LOC100818021), transcript variant X6, mRNA	pentatricopeptide repeat-containing protein At3g49740-like(LOC100818021)	coding protein	psRNATarget
XM_014763076.1	ncRNA:19   AGAAUCUUCACGAAGAUUU   1   |||||||||||=||||||| targets:3827   UCUUAGAAGUGUUUCUAAA   3845 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g49740-like (LOC100818021), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At3g49740-like(LOC100818021)	coding protein	psRNATarget
XM_014763077.1	ncRNA:19   AGAAUCUUCACGAAGAUUU   1   |||||||||||=||||||| targets:3958   UCUUAGAAGUGUUUCUAAA   3976 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g49740-like (LOC100818021), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At3g49740-like(LOC100818021)	coding protein	psRNATarget
XM_014763079.1	ncRNA:19   AGAAUCUUCACGAAGAUUU   1   |||||||||||=||||||| targets:3970   UCUUAGAAGUGUUUCUAAA   3988 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g49740-like (LOC100818021), transcript variant X5, mRNA	pentatricopeptide repeat-containing protein At3g49740-like(LOC100818021)	coding protein	psRNATarget
XM_014763075.1	ncRNA:19   AGAAUCUUCACGAAGAUUU   1   |||||||||||=||||||| targets:4059   UCUUAGAAGUGUUUCUAAA   4077 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g49740-like (LOC100818021), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At3g49740-like(LOC100818021)	coding protein	psRNATarget
XM_006587433.2	ncRNA:19   AGAAUCUUCACGAAGAUUU   1   |||*||||*|||||||||| targets:123   UCUGAGAACUGCUUCUAAA   141 Target Full Sequence	2.5	PREDICTED: Glycine max probable receptor-like protein kinase At1g67000 (LOC102665158), transcript variant X3, mRNA	probable receptor-like protein kinase At1g67000(LOC102665158)	coding protein	psRNATarget