Search result

BaseInfo

ncRNA ID	novel_gma_miR3611
Species	Glycine max
Class	miRNA
Genome position	Chr6:20180606-20180683 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451676
Length	20
Mature sequence(if miRNA)	1 - AGGGAGAAAGCAAAAAAAAA - 20
Stem-loop(if miRNA)	---------------          -  AAAAAAAAA   AU     AAA                AGGGAGAAAG CA         AAU  GGUGU   C                |||||||||| ||         |||  |||||                UUUUUCUUUC GU         UUA  UCGCA   U UUUUUGUUUUAUUGU          A  --------G   CU     CUU
Stem-loop sequence	AGGGAGAAAGCAAAAAAAAAAAAUAUGGUGUAAACUUUCACGCUUCAUUGUGACUUUCUUUUUUGUUAUUUUGUUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006586726.2	ncRNA:20   AAAAAAAAACGAAAGAGGGA   1   |||||||||*|||||||||| targets:33   UUUUUUUUUUCUUUCUCCCU   52 Target Full Sequence	1.5	PREDICTED: Glycine max BTB/POZ domain-containing protein At5g47800-like (LOC100807132), transcript variant X1, mRNA	BTB/POZ domain-containing protein At5g47800-like(LOC100807132)	coding protein	psRNATarget
XM_006586732.2	ncRNA:20   AAAAAAAAACGAAAGAGGGA   1   |||||||||*|||||||||| targets:33   UUUUUUUUUUCUUUCUCCCU   52 Target Full Sequence	1.5	PREDICTED: Glycine max BTB/POZ domain-containing protein At5g47800-like (LOC100807132), transcript variant X7, mRNA	BTB/POZ domain-containing protein At5g47800-like(LOC100807132)	coding protein	psRNATarget
XM_003532128.3	ncRNA:20   AAAAAAAAACGAAAGAGGGA   1   ||||||*|||=||||||||| targets:2798   UUUUUUGUUGUUUUCUCCCU   2817 Target Full Sequence	2.5	PREDICTED: Glycine max cleavage and polyadenylation specificity factor subunit CG7185-like (LOC100813702), mRNA	cleavage and polyadenylation specificity factor subunit CG7185-like(LOC100813702)	coding protein	psRNATarget
XM_006586518.2	ncRNA:20   AAAAAAAAACGAAAGAGGGA   1   ||||||*|||=||||||||| targets:2730   UUUUUUGUUGUUUUCUCCCU   2749 Target Full Sequence	2.5	PREDICTED: Glycine max cleavage and polyadenylation specificity factor subunit CG7185-like (LOC100782869), mRNA	cleavage and polyadenylation specificity factor subunit CG7185-like(LOC100782869)	coding protein	psRNATarget