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BaseInfo

ncRNA ID novel_gma_miR3607
Species Glycine max
Class miRNA
Genome position Chr6:7457749-7457844 [+]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 77 - UCUGAAAGGUAAAAAAAAAA - 96
Stem-loop(if miRNA) --                    --  UCAAUCAUAAUAUUAUAUUCCAC
  UUUUUUUUAUCUUUUAGAAU  GA                       A
  ||||||||||||||||||||  ||
  AAAAAAAAUGGAAAGUCUUA  GA                       U
AA                    UC  UAUGACUUUCAGUUUUUUUCUCU
Stem-loop sequence UUUUUUUUAUCUUUUAGAAUGAUCAAUCAUAAUAUUAUAUUCCACAUUCUCUUUUUUUGACUUUCAGUAUAGCUAUUCUGAAAGGUAAAAAAAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003520936.3
ncRNA:20   AAAAAAAAAAUGGAAAGUCU   1
  ||||||||||*||||||||*
targets:1138   UUUUUUUUUUUCCUUUCAGU   1157

2.5 PREDICTED: Glycine max ER lumen protein-retaining receptor-like (LOC100790733), mRNA ER lumen protein-retaining receptor-like(LOC100790733) coding protein psRNATarget
BT098227.1
ncRNA:20   AAAAAAAAAAUGGAAAGUCU   1
  *|||*||||||=||||||||
targets:271   CUUUCUUUUUAUCUUUCAGA   290

2.5 Soybean clone JCVI-FLGm-12O9 unknown mRNA NA coding protein psRNATarget
XM_014764365.1
ncRNA:20   AAAAAAAAAAUGGAAAGUCU   1
  *||||||*|||||||||||*
targets:4026   GUUUUUUGUUACCUUUCAGU   4045

2.5 PREDICTED: Glycine max probable serine/threonine protein kinase IRE (LOC100806311), transcript variant X2, mRNA probable serine/threonine protein kinase IRE(LOC100806311) coding protein psRNATarget
XM_014764366.1
ncRNA:20   AAAAAAAAAAUGGAAAGUCU   1
  *||||||*|||||||||||*
targets:4020   GUUUUUUGUUACCUUUCAGU   4039

2.5 PREDICTED: Glycine max probable serine/threonine protein kinase IRE (LOC100806311), transcript variant X3, mRNA probable serine/threonine protein kinase IRE(LOC100806311) coding protein psRNATarget
XM_014764367.1
ncRNA:20   AAAAAAAAAAUGGAAAGUCU   1
  *||||||*|||||||||||*
targets:4016   GUUUUUUGUUACCUUUCAGU   4035

2.5 PREDICTED: Glycine max probable serine/threonine protein kinase IRE (LOC100806311), transcript variant X5, mRNA probable serine/threonine protein kinase IRE(LOC100806311) coding protein psRNATarget