Search result

BaseInfo

ncRNA ID	novel_gma_miR3605
Species	Glycine max
Class	miRNA
Genome position	Chr6:1873479-1873617 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451676
Length	20
Mature sequence(if miRNA)	1 - CUUUCUCUCUGCCUCUGAAC - 20
Stem-loop(if miRNA)	--AA    -    AA      UGU    A  AA    --C   AG     ---------AGUA  ---  AGCGUAUCCA     AGAG CAGA  AGAAGG   GAAU UG  AGCC   UAG  UGUAG             GA   UA          G     |||| ||||  ||||||   |||| ||  ||||   |||  |||||             ||   ||     UCUC GUCU  UCUUUC   CUUA AC  UCGG   AUU  ACAUU             CG   GU          C CAAG    C    -C      ---    -  -C    CAA   AA     AAGAUACAAGCAA  AAG  AAAGACAAAA
Stem-loop sequence	AAAGAGCAGAAAAGAAGGUGUGAAUAUGAAAGCCCUAGAGUGUAGAGUAGAUAAGCGUAUCCAGCAAAACAGAAAUGGAAGCAACGAACAUAGAAUUACAAAUUAAACGGCUCCAAUUCCUUUCUCUCUGCCUCUGAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003521293.3	ncRNA:20   CAAGUCUCCGUCUCUCUUUC   1   ***||||||||||||||||| targets:2663   AAGCAGAGGCAGAGAGAAAG   2682 Target Full Sequence	2.0	PREDICTED: Glycine max eukaryotic translation initiation factor 3 subunit A-like (LOC100803796), transcript variant X1, mRNA	eukaryotic translation initiation factor 3 subunit A-like(LOC100803796)	coding protein	psRNATarget
XM_014773849.1	ncRNA:20   CAAGUCUCCGUCUCUCUUUC   1   ***||||||||||||||||| targets:2710   AAGCAGAGGCAGAGAGAAAG   2729 Target Full Sequence	2.0	PREDICTED: Glycine max eukaryotic translation initiation factor 3 subunit A-like (LOC100803796), transcript variant X3, mRNA	eukaryotic translation initiation factor 3 subunit A-like(LOC100803796)	coding protein	psRNATarget
XM_006576921.2	ncRNA:20   CAAGUCUCCGUCUCUCUUUC   1   ***||||||||||||||||| targets:2736   AAGCAGAGGCAGAGAGAAAG   2755 Target Full Sequence	2.0	PREDICTED: Glycine max eukaryotic translation initiation factor 3 subunit A-like (LOC100803796), transcript variant X2, mRNA	eukaryotic translation initiation factor 3 subunit A-like(LOC100803796)	coding protein	psRNATarget
AK243883.1	ncRNA:20   CAAGUCUCCGUCUCUCUUUC   1   *|||||=||||*|||||||| targets:391   CUUCAGGGGCAAAGAGAAAG   410 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-01-I06	NA	coding protein	psRNATarget
NM_001252739.2	ncRNA:20   CAAGUCUCCGUCUCUCUUUC   1   *|||||=||||*|||||||| targets:390   CUUCAGGGGCAAAGAGAAAG   409 Target Full Sequence	2.5	Glycine max uncharacterized LOC100815369 (LOC100815369), mRNA	uncharacterized LOC100815369(LOC100815369)	coding protein	psRNATarget
XM_006589396.2	ncRNA:20   CAAGUCUCCGUCUCUCUUUC   1   *||||||||*|||||||||* targets:113   UUUCAGAGGGAGAGAGAAAA   132 Target Full Sequence	2.5	PREDICTED: Glycine max calcium-dependent protein kinase 4-like (LOC102666917), mRNA	calcium-dependent protein kinase 4-like(LOC102666917)	coding protein	psRNATarget
XM_006599050.2	ncRNA:20   CAAGUCUCCGUCUCUCUUUC   1   ***||||||||||||||||* targets:137   AGGCAGAGGCAGAGAGAAAC   156 Target Full Sequence	3.0	PREDICTED: Glycine max probable methyltransferase PMT20 (LOC100820623), transcript variant X1, mRNA	probable methyltransferase PMT20(LOC100820623)	coding protein	psRNATarget