Search result

BaseInfo

ncRNA ID novel_gma_miR3592
Species Glycine max
Class miRNA
Genome position Chr12:38491976-38492064 [-]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 20
Mature sequence(if miRNA) 70 - UGCGUUUGGAUAUAGAAUUU - 89
Stem-loop(if miRNA) --U     UG    UA         C -GA     --GU     AU
   GCGUU  GAUA  GAAUUUUAA U   GGAAA    AAUUU  C
   |||||  ||||  ||||||||| |   |||||    |||||
   CGUAG  UUGU  CUUAAGAUU A   UCUUU    UUAAG  A
UUU     GU    UA         U AUG     AAGU     AG
Stem-loop sequence UGCGUUUGGAUAUAGAAUUUUAACUGAGGAAAGUAAUUUAUCAGAGAAUUUGAAUUUCUGUAAUUUAGAAUUCAUUGUUUGGAUGCUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT099387.1
ncRNA:20   UUUAAGAUAUAGGUUUGCGU   1
  ***|||||||||||||||||
targets:14   UUUUUCUAUAUCCAAACGCA   33

2.0 Soybean clone JCVI-FLGm-23J16 unknown mRNA NA coding protein psRNATarget
AK287089.1
ncRNA:20   UUUAAGAUAUAGGUUUGCGU   1
  *|*||||*||||||||||||
targets:87   UAUUUCUCUAUCCAAACGCA   106

2.5 Glycine max cDNA, clone: GMFL01-43-O04 NA coding protein psRNATarget
XM_003544879.3
ncRNA:20   UUUAAGAUAUAGGUUUGCGU   1
  *|*||||*||||||||||||
targets:115   UAUUUCUCUAUCCAAACGCA   134

2.5 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 11 (LOC100815088), mRNA CBL-interacting serine/threonine-protein kinase 11(LOC100815088) coding protein psRNATarget