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BaseInfo

ncRNA ID	novel_gma_miR3590
Species	Glycine max
Class	miRNA
Genome position	Chr10:48487676-48487780 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451674
Length	20
Mature sequence(if miRNA)	1 - GUUUUCCUUUUUUCAUUCUU - 20
Stem-loop(if miRNA)	--C     C  CU  GG    U    UUCAA  --  CUUCUUAUGGCUAGCUA    AAUGG AA  GG  AACU AAUA     AG  CU                 G    ||||| ||  ||  |||| ||||     ||  ||                 A    UUACU UU  CC  UUGG UUGU     CU  GU                 U UUC     U  UU  UU    U    --UAA  UU  UUUUUUUUGUAUUAUAC
Stem-loop sequence	CAAUGGCAACUGGGGAACUUAAUAUUCAAAGCUCUUCUUAUGGCUAGCUAGAUCAUAUUAUGUUUUUUUUUGUUUCAAUUGUUUGGUUUUCCUUUUUUCAUUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003537557.3	ncRNA:20   UUCUUACUUUUUUCCUUUUG   1   **|||||||||||||||||* targets:62   UUGAAUGAAAAAAGGAAAAG   81 Target Full Sequence	2.0	PREDICTED: Glycine max mitochondrial chaperone BCS1-like (LOC100785070), transcript variant X1, mRNA	mitochondrial chaperone BCS1-like(LOC100785070)	coding protein	psRNATarget
XM_003537556.3	ncRNA:20   UUCUUACUUUUUUCCUUUUG   1   **|||||||||||||||||* targets:61   UUGAAUGAAAAAAGGAAAAG   80 Target Full Sequence	2.0	PREDICTED: Glycine max mitochondrial chaperone BCS1-like (LOC100785070), transcript variant X2, mRNA	mitochondrial chaperone BCS1-like(LOC100785070)	coding protein	psRNATarget
BT096159.1	ncRNA:20   UUCUUACUUUUUUCCUUUUG   1   ||||||*|||||||||=||| targets:271   AAGAAUAAAAAAAGGAGAAC   290 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-15M10 unknown mRNA	NA	coding protein	psRNATarget
XM_003530741.3	ncRNA:20   UUCUUACUUUUUUCCUUUUG   1   *||||*||||=||||||||| targets:4398   UAGAAGGAAAGAAGGAAAAC   4417 Target Full Sequence	2.5	PREDICTED: Glycine max ABC transporter C family member 3-like (LOC100776443), mRNA	ABC transporter C family member 3-like(LOC100776443)	coding protein	psRNATarget
XM_006574313.2	ncRNA:20   UUCUUACUUUUUUCCUUUUG   1   =||||||||||||*|||||* targets:1136   GAGAAUGAAAAAAAGAAAAA   1155 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100527708 (LOC100527708), transcript variant X1, mRNA	uncharacterized LOC100527708(LOC100527708)	coding protein	psRNATarget
XM_014771477.1	ncRNA:20   UUCUUACUUUUUUCCUUUUG   1   ||||*||||||||*|||||| targets:2399   AAGAUUGAAAAAAAGAAAAC   2418 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102663835 (LOC102663835), transcript variant X1, mRNA	uncharacterized LOC102663835(LOC102663835)	coding protein	psRNATarget
XM_003533679.3	ncRNA:20   UUCUUACUUUUUUCCUUUUG   1   |||=|*|||||||||||||= targets:287   AAGGAGGAAAAAAGGAAAAU   306 Target Full Sequence	3.0	PREDICTED: Glycine max U3 small nucleolar RNA-associated protein 25 (LOC100810500), transcript variant X1, mRNA	U3 small nucleolar RNA-associated protein 25(LOC100810500)	coding protein	psRNATarget
XM_014761957.1	ncRNA:20   UUCUUACUUUUUUCCUUUUG   1   |||=|*|||||||||||||= targets:267   AAGGAGGAAAAAAGGAAAAU   286 Target Full Sequence	3.0	PREDICTED: Glycine max U3 small nucleolar RNA-associated protein 25 (LOC100810500), transcript variant X2, mRNA	U3 small nucleolar RNA-associated protein 25(LOC100810500)	coding protein	psRNATarget
XM_006590454.2	ncRNA:20   UUCUUACUUUUUUCCUUUUG   1   |=|||*|||||||||||||* targets:2131   AGGAAAGAAAAAAGGAAAAG   2150 Target Full Sequence	3.0	PREDICTED: Glycine max mitogen-activated protein kinase kinase kinase YODA-like (LOC100787920), transcript variant X3, mRNA	mitogen-activated protein kinase kinase kinase YODA-like(LOC100787920)	coding protein	psRNATarget
XM_014777017.1	ncRNA:20   UUCUUACUUUUUUCCUUUUG   1   |=|||*|||||||||||||* targets:852   AGGAAAGAAAAAAGGAAAAG   871 Target Full Sequence	3.0	PREDICTED: Glycine max mitogen-activated protein kinase kinase kinase YODA-like (LOC100777350), transcript variant X2, mRNA	mitogen-activated protein kinase kinase kinase YODA-like(LOC100777350)	coding protein	psRNATarget
XM_014777015.1	ncRNA:20   UUCUUACUUUUUUCCUUUUG   1   |=|||*|||||||||||||* targets:732   AGGAAAGAAAAAAGGAAAAG   751 Target Full Sequence	3.0	PREDICTED: Glycine max mitogen-activated protein kinase kinase kinase YODA-like (LOC100777350), transcript variant X1, mRNA	mitogen-activated protein kinase kinase kinase YODA-like(LOC100777350)	coding protein	psRNATarget
XM_014777026.1	ncRNA:20   UUCUUACUUUUUUCCUUUUG   1   |=|||*|||||||||||||* targets:696   AGGAAAGAAAAAAGGAAAAG   715 Target Full Sequence	3.0	PREDICTED: Glycine max mitogen-activated protein kinase kinase kinase YODA-like (LOC100777350), transcript variant X6, mRNA	mitogen-activated protein kinase kinase kinase YODA-like(LOC100777350)	coding protein	psRNATarget
XM_014777029.1	ncRNA:20   UUCUUACUUUUUUCCUUUUG   1   |=|||*|||||||||||||* targets:732   AGGAAAGAAAAAAGGAAAAG   751 Target Full Sequence	3.0	PREDICTED: Glycine max mitogen-activated protein kinase kinase kinase YODA-like (LOC100777350), transcript variant X7, mRNA	mitogen-activated protein kinase kinase kinase YODA-like(LOC100777350)	coding protein	psRNATarget
XM_014777024.1	ncRNA:20   UUCUUACUUUUUUCCUUUUG   1   |=|||*|||||||||||||* targets:630   AGGAAAGAAAAAAGGAAAAG   649 Target Full Sequence	3.0	PREDICTED: Glycine max mitogen-activated protein kinase kinase kinase YODA-like (LOC100777350), transcript variant X5, mRNA	mitogen-activated protein kinase kinase kinase YODA-like(LOC100777350)	coding protein	psRNATarget
XM_014777021.1	ncRNA:20   UUCUUACUUUUUUCCUUUUG   1   |=|||*|||||||||||||* targets:624   AGGAAAGAAAAAAGGAAAAG   643 Target Full Sequence	3.0	PREDICTED: Glycine max mitogen-activated protein kinase kinase kinase YODA-like (LOC100777350), transcript variant X4, mRNA	mitogen-activated protein kinase kinase kinase YODA-like(LOC100777350)	coding protein	psRNATarget
XM_014777019.1	ncRNA:20   UUCUUACUUUUUUCCUUUUG   1   |=|||*|||||||||||||* targets:576   AGGAAAGAAAAAAGGAAAAG   595 Target Full Sequence	3.0	PREDICTED: Glycine max mitogen-activated protein kinase kinase kinase YODA-like (LOC100777350), transcript variant X3, mRNA	mitogen-activated protein kinase kinase kinase YODA-like(LOC100777350)	coding protein	psRNATarget
XM_006590452.2	ncRNA:20   UUCUUACUUUUUUCCUUUUG   1   |=|||*|||||||||||||* targets:576   AGGAAAGAAAAAAGGAAAAG   595 Target Full Sequence	3.0	PREDICTED: Glycine max mitogen-activated protein kinase kinase kinase YODA-like (LOC100787920), transcript variant X1, mRNA	mitogen-activated protein kinase kinase kinase YODA-like(LOC100787920)	coding protein	psRNATarget
XM_003538648.3	ncRNA:20   UUCUUACUUUUUUCCUUUUG   1   |=|||*|||||||||||||* targets:566   AGGAAAGAAAAAAGGAAAAG   585 Target Full Sequence	3.0	PREDICTED: Glycine max mitogen-activated protein kinase kinase kinase YODA-like (LOC100787920), transcript variant X2, mRNA	mitogen-activated protein kinase kinase kinase YODA-like(LOC100787920)	coding protein	psRNATarget