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BaseInfo

ncRNA ID novel_gma_miR3582
Species Glycine max
Class miRNA
Genome position Chr9:11744994-11745050 [-]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 21
Mature sequence(if miRNA) 37 - UAAACUGUUUCCUGCCAUGCU - 57
Stem-loop(if miRNA) --    -     -    G CA  CU    AU
  UAAA CUGUU UCCU C  UG  GGUU  G
  |||| ||||| |||| |  ||  ||||  C
  GUUU GAUAG AGGA G  AC  CCAA  A
AA    C     U    - -A  --    GA
Stem-loop sequence UAAACUGUUUCCUGCCAUGCUGGUUAUGCAAGAACCCAAGAGGAUGAUAGCUUUGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006591073.2
ncRNA:21   UCGUACCGUCCUUUGUCAAAU   1
  |*||||*|||*||||||||||
targets:4312   ACCAUGACAGAAAACAGUUUA   4332

2.5 PREDICTED: Glycine max uncharacterized LOC100813071 (LOC100813071), transcript variant X5, mRNA uncharacterized LOC100813071(LOC100813071) coding protein psRNATarget
XM_006591071.2
ncRNA:21   UCGUACCGUCCUUUGUCAAAU   1
  |*||||*|||*||||||||||
targets:4327   ACCAUGACAGAAAACAGUUUA   4347

2.5 PREDICTED: Glycine max uncharacterized LOC100813071 (LOC100813071), transcript variant X4, mRNA uncharacterized LOC100813071(LOC100813071) coding protein psRNATarget
XM_006591070.2
ncRNA:21   UCGUACCGUCCUUUGUCAAAU   1
  |*||||*|||*||||||||||
targets:4372   ACCAUGACAGAAAACAGUUUA   4392

2.5 PREDICTED: Glycine max uncharacterized LOC100813071 (LOC100813071), transcript variant X3, mRNA uncharacterized LOC100813071(LOC100813071) coding protein psRNATarget
XM_006591069.2
ncRNA:21   UCGUACCGUCCUUUGUCAAAU   1
  |*||||*|||*||||||||||
targets:4372   ACCAUGACAGAAAACAGUUUA   4392

2.5 PREDICTED: Glycine max uncharacterized LOC100813071 (LOC100813071), transcript variant X2, mRNA uncharacterized LOC100813071(LOC100813071) coding protein psRNATarget
XM_006591068.2
ncRNA:21   UCGUACCGUCCUUUGUCAAAU   1
  |*||||*|||*||||||||||
targets:4417   ACCAUGACAGAAAACAGUUUA   4437

2.5 PREDICTED: Glycine max uncharacterized LOC100813071 (LOC100813071), transcript variant X1, mRNA uncharacterized LOC100813071(LOC100813071) coding protein psRNATarget
AK245101.1
ncRNA:21   UCGUACCGUCCUUUGUCAAAU   1
  ***|||*|||||||||||||*
targets:487   CUGAUGUCAGGAAACAGUUUU   507

3.0 Glycine max cDNA, clone: GMFL01-21-B23 NA coding protein psRNATarget