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BaseInfo

ncRNA ID novel_gma_miR3577
Species Glycine max
Class miRNA
Genome position Chr9:48030070-48030128 [+]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 21
Mature sequence(if miRNA) 1 - UCGUGUCGGUGUCGGUGUUAG - 21
Stem-loop(if miRNA) --  G     G    --      A  UG  G
  UC UGUCG UGUC  GGUGUU GG  CG G
  || ||||| ||||  |||||| ||  ||
  GG ACGGC ACAG  CCACAG CU  GC U
AG  A     -    GC      G  GU  G
Stem-loop sequence UCGUGUCGGUGUCGGUGUUAGGUGCGGGUGCGUGUCGGACACCCGGACACGGCAAGGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006605697.2
ncRNA:21   GAUUGUGGCUGUGGCUGUGCU   1
  **|=||||||||||||||||=
targets:2373   GAAGCACCGACACCGACACGG   2393

2.0 PREDICTED: Glycine max uncharacterized LOC102669551 (LOC102669551), mRNA uncharacterized LOC102669551(LOC102669551) coding protein psRNATarget
XM_014775938.1
ncRNA:21   GAUUGUGGCUGUGGCUGUGCU   1
  **|=||||||||||||||||=
targets:415   GAAGCACCGACACCGACACGG   435

2.0 PREDICTED: Glycine max actin-46-like (LOC106798766), mRNA actin-46-like(LOC106798766) coding protein psRNATarget
XM_006589470.2
ncRNA:21   GAUUGUGGCUGUGGCUGUGCU   1
  **=||=||||||||||||||=
targets:226   AAGACGCCGACACCGACACGG   246

3.0 PREDICTED: Glycine max U-box domain-containing protein 32-like (LOC100799675), transcript variant X1, mRNA U-box domain-containing protein 32-like(LOC100799675) coding protein psRNATarget
XM_006589471.2
ncRNA:21   GAUUGUGGCUGUGGCUGUGCU   1
  **=||=||||||||||||||=
targets:227   AAGACGCCGACACCGACACGG   247

3.0 PREDICTED: Glycine max U-box domain-containing protein 32-like (LOC100799675), transcript variant X2, mRNA U-box domain-containing protein 32-like(LOC100799675) coding protein psRNATarget