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BaseInfo

ncRNA ID novel_gma_miR3573
Species Glycine max
Class miRNA
Genome position Chr8:8819844-8819893 [+]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 20
Mature sequence(if miRNA) 31 - UACCCUUGCAUAUACAAAGA - 50
Stem-loop(if miRNA) --     -       A    UG    
  UUUGU UAUGCGA GGUA  GGACG
  ||||| ||||||| ||||  ||||C
  AAACA AUACGUU CCAU  UCUGA
AG     U       C    --    
Stem-loop sequence UUUGUUAUGCGAAGGUAUGGGACGCAGUCUUACCCUUGCAUAUACAAAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014772480.1
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||||||||||||||||
targets:1339   UCUUUGUAUAUGCAAGGGUA   1358

0.0 PREDICTED: Glycine max uncharacterized LOC100809711 (LOC100809711), mRNA uncharacterized LOC100809711(LOC100809711) coding protein psRNATarget
XM_014774528.1
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||||||||||||||||
targets:4493   UCUUUGUAUAUGCAAGGGUA   4512

0.0 PREDICTED: Glycine max probable cyclic nucleotide-gated ion channel 14 (LOC100801879), mRNA probable cyclic nucleotide-gated ion channel 14(LOC100801879) coding protein psRNATarget
BT099449.1
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:235   UCUUUGCAUAUGCAAGGGUA   254

1.0 Soybean clone JCVI-FLGm-16P16 unknown mRNA NA coding protein psRNATarget
XM_003531162.3
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:708   UCUUUGCAUAUGCAAGGGUA   727

1.0 PREDICTED: Glycine max ribosomal protein S19, mitochondrial-like (LOC100782150), mRNA ribosomal protein S19, mitochondrial-like(LOC100782150) coding protein psRNATarget
BT093604.1
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:574   UCUUUGCAUAUGCAAGGGUA   593

1.0 Soybean clone JCVI-FLGm-17D19 unknown mRNA NA coding protein psRNATarget
XM_006591787.2
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:1101   UCUUUGCAUAUGCAAGGGUA   1120

1.0 PREDICTED: Glycine max uncharacterized LOC100527645 (LOC100527645), transcript variant X2, mRNA uncharacterized LOC100527645(LOC100527645) coding protein psRNATarget
XM_014770084.1
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:977   UCUUUGCAUAUGCAAGGGUA   996

1.0 PREDICTED: Glycine max uncharacterized LOC106796781 (LOC106796781), mRNA uncharacterized LOC106796781(LOC106796781) coding protein psRNATarget
XM_014775624.1
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:1366   UCUUUGCAUAUGCAAGGGUA   1385

1.0 PREDICTED: Glycine max putative protein TPRXL (LOC102661448), mRNA putative protein TPRXL(LOC102661448) coding protein psRNATarget
XM_003541303.3
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:151   UCUUUGCAUAUGCAAGGGUA   170

1.0 PREDICTED: Glycine max ethylene-responsive transcription factor 1B-like (LOC100812017), mRNA ethylene-responsive transcription factor 1B-like(LOC100812017) coding protein psRNATarget
XM_003545657.3
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:1576   UCUUUGCAUAUGCAAGGGUA   1595

1.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g09450, mitochondrial-like (LOC100811179), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At5g09450, mitochondrial-like(LOC100811179) coding protein psRNATarget
XM_006597295.2
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:1583   UCUUUGCAUAUGCAAGGGUA   1602

1.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g09450, mitochondrial-like (LOC100811179), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At5g09450, mitochondrial-like(LOC100811179) coding protein psRNATarget
XM_006589081.2
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:1535   UCUUUGCAUAUGCAAGGGUA   1554

1.0 PREDICTED: Glycine max microtubule-binding protein TANGLED-like (LOC100817280), mRNA microtubule-binding protein TANGLED-like(LOC100817280) coding protein psRNATarget
XM_014764894.1
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:1823   UCUUUGCAUAUGCAAGGGUA   1842

1.0 PREDICTED: Glycine max protein disulfide-isomerase 5-4-like (LOC100787595), mRNA protein disulfide-isomerase 5-4-like(LOC100787595) coding protein psRNATarget
XM_003530855.3
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:1343   UCUUUGCAUAUGCAAGGGUA   1362

1.0 PREDICTED: Glycine max actin cytoskeleton-regulatory complex protein PAN1-like (LOC100800517), mRNA actin cytoskeleton-regulatory complex protein PAN1-like(LOC100800517) coding protein psRNATarget
AK243804.1
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:1749   UCUUUGCAUAUGCAAGGGUA   1768

1.0 Glycine max cDNA, clone: GMFL01-01-E21 NA coding protein psRNATarget
XM_014772912.1
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:256   UCUUUGCAUAUGCAAGGGUA   275

1.0 PREDICTED: Glycine max uncharacterized LOC100789877 (LOC100789877), transcript variant X3, mRNA uncharacterized LOC100789877(LOC100789877) coding protein psRNATarget
XM_006577880.2
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:2300   UCUUUGCAUAUGCAAGGGUA   2319

1.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g42310, mitochondrial (LOC100808427), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At5g42310, mitochondrial(LOC100808427) coding protein psRNATarget
AK244196.1
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:1021   UCUUUGCAUAUGCAAGGGUA   1040

1.0 Glycine max cDNA, clone: GMFL01-02-F18 NA coding protein psRNATarget
NM_001249998.2
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:2186   UCUUUGCAUAUGCAAGGGUA   2205

1.0 Glycine max uncharacterized LOC100527500 (LOC100527500), mRNA uncharacterized LOC100527500(LOC100527500) coding protein psRNATarget
XM_006600051.2
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:2517   UCUUUGCAUAUGCAAGGGUA   2536

1.0 PREDICTED: Glycine max peroxisomal fatty acid beta-oxidation multifunctional protein (LOC100170754), transcript variant X1, mRNA peroxisomal fatty acid beta-oxidation multifunctional protein(LOC100170754) coding protein psRNATarget
XM_006595801.2
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:1007   UCUUUGCAUAUGCAAGGGUA   1026

1.0 PREDICTED: Glycine max uncharacterized LOC102662071 (LOC102662071), transcript variant X3, mRNA uncharacterized LOC102662071(LOC102662071) coding protein psRNATarget
XM_014766568.1
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:1154   UCUUUGCAUAUGCAAGGGUA   1173

1.0 PREDICTED: Glycine max uncharacterized LOC102662071 (LOC102662071), transcript variant X2, mRNA uncharacterized LOC102662071(LOC102662071) coding protein psRNATarget
XM_006595799.2
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:1609   UCUUUGCAUAUGCAAGGGUA   1628

1.0 PREDICTED: Glycine max uncharacterized LOC102662071 (LOC102662071), transcript variant X4, mRNA uncharacterized LOC102662071(LOC102662071) coding protein psRNATarget
XM_006595798.2
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:1610   UCUUUGCAUAUGCAAGGGUA   1629

1.0 PREDICTED: Glycine max uncharacterized LOC102662071 (LOC102662071), transcript variant X1, mRNA uncharacterized LOC102662071(LOC102662071) coding protein psRNATarget
XM_014768453.1
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:1882   UCUUUGCAUAUGCAAGGGUA   1901

1.0 PREDICTED: Glycine max eukaryotic peptide chain release factor subunit 1-3 (LOC106796341), mRNA eukaryotic peptide chain release factor subunit 1-3(LOC106796341) coding protein psRNATarget
XM_006604000.2
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:3695   UCUUUGCAUAUGCAAGGGUA   3714

1.0 PREDICTED: Glycine max histone-lysine N-methyltransferase ATX5-like (LOC100775276), transcript variant X2, mRNA histone-lysine N-methyltransferase ATX5-like(LOC100775276) coding protein psRNATarget
XM_006604003.2
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:3701   UCUUUGCAUAUGCAAGGGUA   3720

1.0 PREDICTED: Glycine max histone-lysine N-methyltransferase ATX5-like (LOC100775276), transcript variant X5, mRNA histone-lysine N-methyltransferase ATX5-like(LOC100775276) coding protein psRNATarget
XM_006604002.2
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:3771   UCUUUGCAUAUGCAAGGGUA   3790

1.0 PREDICTED: Glycine max histone-lysine N-methyltransferase ATX5-like (LOC100775276), transcript variant X4, mRNA histone-lysine N-methyltransferase ATX5-like(LOC100775276) coding protein psRNATarget
XM_006604001.2
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:3822   UCUUUGCAUAUGCAAGGGUA   3841

1.0 PREDICTED: Glycine max histone-lysine N-methyltransferase ATX5-like (LOC100775276), transcript variant X3, mRNA histone-lysine N-methyltransferase ATX5-like(LOC100775276) coding protein psRNATarget
XM_003555038.3
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||||
targets:3906   UCUUUGCAUAUGCAAGGGUA   3925

1.0 PREDICTED: Glycine max histone-lysine N-methyltransferase ATX5-like (LOC100775276), transcript variant X1, mRNA histone-lysine N-methyltransferase ATX5-like(LOC100775276) coding protein psRNATarget
XM_014777562.1
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  |*||||*|||||||||||||
targets:1245   UAUUUGCAUAUGCAAGGGUA   1264

2.0 PREDICTED: Glycine max dof zinc finger protein DOF2.2-like (LOC100814555), mRNA dof zinc finger protein DOF2.2-like(LOC100814555) coding protein psRNATarget
XM_006578031.2
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||*|||*|||||||||||||
targets:311   UCCUUGCAUAUGCAAGGGUA   330

2.0 PREDICTED: Glycine max F-box/LRR-repeat protein 15-like (LOC100803643), transcript variant X3, mRNA F-box/LRR-repeat protein 15-like(LOC100803643) coding protein psRNATarget
XM_003523605.3
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||*|||*|||||||||||||
targets:311   UCCUUGCAUAUGCAAGGGUA   330

2.0 PREDICTED: Glycine max F-box/LRR-repeat protein 15-like (LOC100803643), transcript variant X1, mRNA F-box/LRR-repeat protein 15-like(LOC100803643) coding protein psRNATarget
XM_014774839.1
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  |||||||||||||||||*|=
targets:30   UCUUUGUAUAUGCAAGGAUG   49

2.5 PREDICTED: Glycine max protein BONZAI 1-like (LOC100798141), transcript variant X5, mRNA protein BONZAI 1-like(LOC100798141) coding protein psRNATarget
XM_006602962.2
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||=|||||||
targets:1815   UCUUUGCAUAUGUAAGGGUA   1834

2.5 PREDICTED: Glycine max 60S ribosomal protein L23a-like (LOC100777933), transcript variant X2, mRNA 60S ribosomal protein L23a-like(LOC100777933) coding protein psRNATarget
XM_003552626.3
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||=|||||||
targets:1833   UCUUUGCAUAUGUAAGGGUA   1852

2.5 PREDICTED: Glycine max 60S ribosomal protein L23a-like (LOC100777933), transcript variant X1, mRNA 60S ribosomal protein L23a-like(LOC100777933) coding protein psRNATarget
XM_014769250.1
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*||*||||||||||
targets:476   UCUUUGCAUUUGCAAGGGUA   495

2.5 PREDICTED: Glycine max protein trichome birefringence-like 45 (LOC102669374), transcript variant X2, mRNA protein trichome birefringence-like 45(LOC102669374) coding protein psRNATarget
XM_014769247.1
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*||*||||||||||
targets:750   UCUUUGCAUUUGCAAGGGUA   769

2.5 PREDICTED: Glycine max protein trichome birefringence-like 45 (LOC102669374), transcript variant X1, mRNA protein trichome birefringence-like 45(LOC102669374) coding protein psRNATarget
XM_014767967.1
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||*|||
targets:1581   UCUUUGCAUAUGCAAGAGUA   1600

2.5 PREDICTED: Glycine max 1-aminocyclopropane-1-carboxylate oxidase homolog 1 (LOC100789941), transcript variant X2, mRNA 1-aminocyclopropane-1-carboxylate oxidase homolog 1(LOC100789941) coding protein psRNATarget
XM_006598051.2
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*||*||||||||||
targets:2803   UCUUUGCAUUUGCAAGGGUA   2822

2.5 PREDICTED: Glycine max uncharacterized LOC100793985 (LOC100793985), transcript variant X2, mRNA uncharacterized LOC100793985(LOC100793985) coding protein psRNATarget
XM_003546676.3
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*||*||||||||||
targets:2806   UCUUUGCAUUUGCAAGGGUA   2825

2.5 PREDICTED: Glycine max uncharacterized LOC100793985 (LOC100793985), transcript variant X1, mRNA uncharacterized LOC100793985(LOC100793985) coding protein psRNATarget
XM_006592080.2
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  ||||||*|||||||||||*|
targets:4643   UCUUUGCAUAUGCAAGGGCA   4662

2.5 PREDICTED: Glycine max flowering time control protein FPA-like (LOC100795342), transcript variant X2, mRNA flowering time control protein FPA-like(LOC100795342) coding protein psRNATarget
XM_006586327.2
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  |||**|*|||||||||||||
targets:41   UCUCAGAAUAUGCAAGGGUA   60

3.0 PREDICTED: Glycine max uncharacterized LOC100780016 (LOC100780016), partial mRNA uncharacterized LOC100780016(LOC100780016) coding protein psRNATarget
NM_001250345.1
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  |||**|*|||||||||||||
targets:531   UCUCAGAAUAUGCAAGGGUA   550

3.0 Glycine max uncharacterized LOC100500132 (LOC100500132), mRNA uncharacterized LOC100500132(LOC100500132) coding protein psRNATarget
BT090974.1
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  |||**|*|||||||||||||
targets:531   UCUCAGAAUAUGCAAGGGUA   550

3.0 Soybean clone JCVI-FLGm-5F18 unknown mRNA NA coding protein psRNATarget
AK285564.1
ncRNA:20   AGAAACAUAUACGUUCCCAU   1
  |||**|*|||||||||||||
targets:495   UCUCAGAAUAUGCAAGGGUA   514

3.0 Glycine max cDNA, clone: GMFL01-12-K17 NA coding protein psRNATarget
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