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BaseInfo

ncRNA ID novel_gma_miR3571
Species Glycine max
Class miRNA
Genome position Chr8:6086590-6086702 [+]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 21
Mature sequence(if miRNA) 93 - CAGGCCCAUGUCCAUAUGCUG - 113
Stem-loop(if miRNA) --     A   GA        U  -GG     CA -U     - UC  G    UUU  A
  GCAUG GGA  GUGGGUUU CC   CUGAU  C  CGACG C  AC AGUG   UG G
  ||||| |||  |||||||| ||   |||||  |  ||||| |  || ||||   ||
  CGUAU CCU  UACCCGGA GG   GAUUG  G  GUUGC G  UG UCAU   GC A
GU     A   -G        C  AGG     AG UU     U UU  A    -GU  U
Stem-loop sequence GCAUGAGGAGAGUGGGUUUUCCGGCUGAUCACUCGACGCUCACGAGUGUUUUGAGAUCGUGUACUAGUUUGUCGUUGUUGGAGUUAGGGAGGCAGGCCCAUGUCCAUAUGCUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003542411.3
ncRNA:21   GUCGUAUACCUGUACCCGGAC   1
  *||*||||||||||||||||*
targets:2152   GAGGAUAUGGACAUGGGCCUC   2172

2.0 PREDICTED: Glycine max cation/H(+) antiporter 20-like (LOC100805993), mRNA cation/H(+) antiporter 20-like(LOC100805993) coding protein psRNATarget