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BaseInfo

ncRNA ID	novel_gma_miR3558
Species	Glycine max
Class	miRNA
Genome position	Chr7:9893387-9893486 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451674
Length	20
Mature sequence(if miRNA)	81 - CCGUAAGAAGAAAAACAAGC - 100
Stem-loop(if miRNA)	--                                   -               UUGUUUUUCUUCUUACGGAUCAAGGUGAUCCGUAC UUGAUCUGUAAGA   ||||||||||||||||||||||||||||||||||| ||||||||||||C   AACAAAAAGAAGAAUGCCUAGUUCCACUAGGCAUG AACUAGGCAUUCA CG                                   C
Stem-loop sequence	UUGUUUUUCUUCUUACGGAUCAAGGUGAUCCGUACUUGAUCUGUAAGACACUUACGGAUCAACGUACGGAUCACCUUGAUCCGUAAGAAGAAAAACAAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014768296.1	ncRNA:20   CGAACAAAAAGAAGAAUGCC   1   *|||*|||||=||||||||| targets:1950   UCUUUUUUUUUUUCUUACGG   1969 Target Full Sequence	2.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase RING1-like (LOC100785893), transcript variant X3, mRNA	E3 ubiquitin-protein ligase RING1-like(LOC100785893)	coding protein	psRNATarget
XM_014768295.1	ncRNA:20   CGAACAAAAAGAAGAAUGCC   1   *|||*|||||=||||||||| targets:1950   UCUUUUUUUUUUUCUUACGG   1969 Target Full Sequence	2.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase RING1-like (LOC100785893), transcript variant X2, mRNA	E3 ubiquitin-protein ligase RING1-like(LOC100785893)	coding protein	psRNATarget
XM_014768294.1	ncRNA:20   CGAACAAAAAGAAGAAUGCC   1   *|||*|||||=||||||||| targets:1950   UCUUUUUUUUUUUCUUACGG   1969 Target Full Sequence	2.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase RING1-like (LOC100785893), transcript variant X1, mRNA	E3 ubiquitin-protein ligase RING1-like(LOC100785893)	coding protein	psRNATarget
XM_014768297.1	ncRNA:20   CGAACAAAAAGAAGAAUGCC   1   *|||*|||||=||||||||| targets:1950   UCUUUUUUUUUUUCUUACGG   1969 Target Full Sequence	2.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase RING1-like (LOC100785893), transcript variant X4, mRNA	E3 ubiquitin-protein ligase RING1-like(LOC100785893)	coding protein	psRNATarget
XM_014768298.1	ncRNA:20   CGAACAAAAAGAAGAAUGCC   1   *|||*|||||=||||||||| targets:1950   UCUUUUUUUUUUUCUUACGG   1969 Target Full Sequence	2.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase RING1-like (LOC100785893), transcript variant X5, mRNA	E3 ubiquitin-protein ligase RING1-like(LOC100785893)	coding protein	psRNATarget
XM_014768299.1	ncRNA:20   CGAACAAAAAGAAGAAUGCC   1   *|||*|||||=||||||||| targets:1950   UCUUUUUUUUUUUCUUACGG   1969 Target Full Sequence	2.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase RING1-like (LOC100785893), transcript variant X6, mRNA	E3 ubiquitin-protein ligase RING1-like(LOC100785893)	coding protein	psRNATarget
XM_006576929.2	ncRNA:20   CGAACAAAAAGAAGAAUGCC   1   *|||*|||||||||||*||| targets:8   UCUUCUUUUUCUUCUUUCGG   27 Target Full Sequence	2.5	PREDICTED: Glycine max phosphatidate phosphatase PAH1-like (LOC102662325), transcript variant X1, mRNA	phosphatidate phosphatase PAH1-like(LOC102662325)	coding protein	psRNATarget