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BaseInfo

ncRNA ID	novel_gma_miR3557
Species	Glycine max
Class	miRNA
Genome position	Chr7:11583611-11583814 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451674
Length	20
Mature sequence(if miRNA)	1 - UGAUGAGGUGUUGGUGAUGU - 20
Stem-loop(if miRNA)	--                          C     C                          A   G  - GAAC   -GUG   CG AA    ---   CU   UCA   AUCAUCAACGCCUCAUCAAUGUUGUC UUGGC AGGGUGGUCAACAUUUGAUCCCACUU UAA GC C    AGU    UCU  A  GGCA   AGU  UCC   A   |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| || |    |||    |||  |  ||||   |||  |||   UAGUGGUUGUGGAGUAGUUGCAACAG AACUG UCCUACCAGUUGUAGGCUAGGGUGAA GUU CG G    UCG    AGA  U  UCGU   UUA  AGG   A UG                          A     -                          C   A  A ---A   AGUA   AU -A    AGC   AG   UAU
Stem-loop sequence	AUCAUCAACGCCUCAUCAAUGUUGUCCUUGGCCAGGGUGGUCAACAUUUGAUCCCACUUAUAAGGCCGAACAGUGUGUCUCGAAAGGCAAGUCUUCCUCAAAUAUGGAGAAUUCGAUGCUAUUAAGAAUGAGCUAGAGCAUUGCAAGUGGGAUCGGAUGUUGACCAUCCUGUCAAAGACAACGUUGAUGAGGUGUUGGUGAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003527753.3	ncRNA:20   UGUAGUGGUUGUGGAGUAGU   1   =|*||||||||||||||||= targets:1880   GCCUCACCAACACCUCAUCG   1899 Target Full Sequence	2.0	PREDICTED: Glycine max E3 ubiquitin-protein ligase At1g63170-like (LOC100795904), mRNA	E3 ubiquitin-protein ligase At1g63170-like(LOC100795904)	coding protein	psRNATarget
XM_003522595.3	ncRNA:20   UGUAGUGGUUGUGGAGUAGU   1   =|*||||||||||||||||= targets:1561   GCCUCACCAACACCUCAUCG   1580 Target Full Sequence	2.0	PREDICTED: Glycine max E3 ubiquitin-protein ligase At1g12760-like (LOC100775815), transcript variant X1, mRNA	E3 ubiquitin-protein ligase At1g12760-like(LOC100775815)	coding protein	psRNATarget
XM_006578111.2	ncRNA:20   UGUAGUGGUUGUGGAGUAGU   1   =|*||||||||||||||||= targets:1464   GCCUCACCAACACCUCAUCG   1483 Target Full Sequence	2.0	PREDICTED: Glycine max E3 ubiquitin-protein ligase At1g12760-like (LOC100775815), transcript variant X2, mRNA	E3 ubiquitin-protein ligase At1g12760-like(LOC100775815)	coding protein	psRNATarget
XM_006595040.2	ncRNA:20   UGUAGUGGUUGUGGAGUAGU   1   |||*|||||||||||=|||| targets:965   ACAACACCAACACCUUAUCA   984 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor bHLH87-like (LOC100778004), transcript variant X1, mRNA	transcription factor bHLH87-like(LOC100778004)	coding protein	psRNATarget
XM_006595041.2	ncRNA:20   UGUAGUGGUUGUGGAGUAGU   1   |||*|||||||||||=|||| targets:956   ACAACACCAACACCUUAUCA   975 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor bHLH87-like (LOC100778004), transcript variant X3, mRNA	transcription factor bHLH87-like(LOC100778004)	coding protein	psRNATarget
XM_014766114.1	ncRNA:20   UGUAGUGGUUGUGGAGUAGU   1   |||*|||||||||||=|||| targets:793   ACAACACCAACACCUUAUCA   812 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor bHLH87-like (LOC100778004), transcript variant X2, mRNA	transcription factor bHLH87-like(LOC100778004)	coding protein	psRNATarget