Search result

BaseInfo

ncRNA ID novel_gma_miR3552
Species Glycine max
Class miRNA
Genome position Chr6:17291004-17291095 [+]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 20
Mature sequence(if miRNA) 73 - AUGGUUUUCUGUGCUUGAGG - 92
Stem-loop(if miRNA) --   UU    UU         UGAAGA    CUCCAACACUGUAGAA
  UCA  GCAU  GAGAACUGU      UCUU                G
  |||  ||||  |||||||||      ||||                G
  AGU  CGUG  CUUUUGGUA      GUGG                U
GG   -U    -U         ---UGG    UUAAUUACAGAAGAGU
Stem-loop sequence UCAUUGCAUUUGAGAACUGUUGAAGAUCUUCUCCAACACUGUAGAAGGUUGAGAAGACAUUAAUUGGUGGGUAUGGUUUUCUGUGCUUGAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT090419.1
ncRNA:20   GGAGUUCGUGUCUUUUGGUA   1
  =|||||*||||*||||||||
targets:241   UCUCAAACACAUAAAACCAU   260

2.5 Soybean clone JCVI-FLGm-18G19 unknown mRNA NA coding protein psRNATarget
XM_003542564.3
ncRNA:20   GGAGUUCGUGUCUUUUGGUA   1
  =|||||*||||*||||||||
targets:263   UCUCAAACACAUAAAACCAU   282

2.5 PREDICTED: Glycine max alpha/beta hydrolase domain-containing protein 17B-like (LOC100797115), transcript variant X1, mRNA alpha/beta hydrolase domain-containing protein 17B-like(LOC100797115) coding protein psRNATarget