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BaseInfo

ncRNA ID	novel_gma_miR3544
Species	Glycine max
Class	miRNA
Genome position	Chr6:41492154-41492241 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451674;SRR1451678
Length	20
Mature sequence(if miRNA)	1 - UUUUUGGUUGGUUGUGUUGA - 20
Stem-loop(if miRNA)	--     C    -      UCACUUCCCUCCCUUU         U   AACAC GCUA CCAAGA                GUUUCAGAU A   ||||| |||| ||||||                ||||||||| G   UUGUG UGGU GGUUUU                UAAAGUUUA A AG     U    U      --UUUUUUGUAAAAGU         C
Stem-loop sequence	AACACCGCUACCAAGAUCACUUCCCUCCCUUUGUUUCAGAUUAGACAUUUGAAAUUGAAAAUGUUUUUUUUUUGGUUGGUUGUGUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT098695.1	ncRNA:20   AGUUGUGUUGGUUGGUUUUU   1   *||*|||||||||||||||| targets:88   ACAUCACAACCAACCAAAAA   107 Target Full Sequence	1.0	Soybean clone JCVI-FLGm-23I8 unknown mRNA	NA	coding protein	psRNATarget
XM_003547677.3	ncRNA:20   AGUUGUGUUGGUUGGUUUUU   1   *||||=*||||||||||||| targets:250   GCAACGGAACCAACCAAAAA   269 Target Full Sequence	2.0	PREDICTED: Glycine max CASP-like protein 4A1 (LOC100818485), mRNA	CASP-like protein 4A1(LOC100818485)	coding protein	psRNATarget
XM_006603842.2	ncRNA:20   AGUUGUGUUGGUUGGUUUUU   1   *||=||||||||*||||||| targets:223   ACAGCACAACCACCCAAAAA   242 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102659957 (LOC102659957), mRNA	uncharacterized LOC102659957(LOC102659957)	coding protein	psRNATarget
KR106151.1	ncRNA:20   AGUUGUGUUGGUUGGUUUUU   1   *|||*|=||||||||||||= targets:440   GCAAAAUAACCAACCAAAAG   459 Target Full Sequence	3.0	Glycine max clone CDS43 PhoD-like phosphatase (Hs1) mRNA, Hs1-1 allele, complete cds	NA	coding protein	psRNATarget
KR106155.1	ncRNA:20   AGUUGUGUUGGUUGGUUUUU   1   *|||*|=||||||||||||= targets:440   GCAAAAUAACCAACCAAAAG   459 Target Full Sequence	3.0	Glycine max clone CDS61 PhoD-like phosphatase (Hs1) mRNA, Hs1-1 allele, complete cds	NA	coding protein	psRNATarget
KR106149.1	ncRNA:20   AGUUGUGUUGGUUGGUUUUU   1   *|||*|=||||||||||||= targets:440   GCAAAAUAACCAACCAAAAG   459 Target Full Sequence	3.0	Glycine max clone CDS19 PhoD-like phosphatase (Hs1) mRNA, Hs1-1 allele, complete cds	NA	coding protein	psRNATarget
KR106147.1	ncRNA:20   AGUUGUGUUGGUUGGUUUUU   1   *|||*|=||||||||||||= targets:440   GCAAAAUAACCAACCAAAAG   459 Target Full Sequence	3.0	Glycine max clone CDS6 PhoD-like phosphatase (Hs1) mRNA, Hs1-1 allele, complete cds	NA	coding protein	psRNATarget
KR106154.1	ncRNA:20   AGUUGUGUUGGUUGGUUUUU   1   *|||*|=||||||||||||= targets:440   GCAAAAUAACCAACCAAAAG   459 Target Full Sequence	3.0	Glycine max clone CDS50 PhoD-like phosphatase (Hs1) mRNA, Hs1-1 allele, complete cds	NA	coding protein	psRNATarget
NM_001317617.1	ncRNA:20   AGUUGUGUUGGUUGGUUUUU   1   *|||*|=||||||||||||= targets:440   GCAAAAUAACCAACCAAAAG   459 Target Full Sequence	3.0	Glycine max uncharacterized LOC100801460 (LOC100801460), mRNA	uncharacterized LOC100801460(LOC100801460)	coding protein	psRNATarget
KR106150.1	ncRNA:20   AGUUGUGUUGGUUGGUUUUU   1   *|||*|=||||||||||||= targets:440   GCAAAAUAACCAACCAAAAG   459 Target Full Sequence	3.0	Glycine max clone CDS33 PhoD-like phosphatase (Hs1) mRNA, Hs1-1 allele, complete cds	NA	coding protein	psRNATarget
KR106146.1	ncRNA:20   AGUUGUGUUGGUUGGUUUUU   1   *|||*|=||||||||||||= targets:440   GCAAAAUAACCAACCAAAAG   459 Target Full Sequence	3.0	Glycine max clone CDS1 PhoD-like phosphatase (Hs1) mRNA, Hs1-1 allele, complete cds	NA	coding protein	psRNATarget
KR106156.1	ncRNA:20   AGUUGUGUUGGUUGGUUUUU   1   *|||*|=||||||||||||= targets:440   GCAAAAUAACCAACCAAAAG   459 Target Full Sequence	3.0	Glycine max clone CDS63 PhoD-like phosphatase (Hs1) mRNA, Hs1-1 allele, complete cds	NA	coding protein	psRNATarget
KR106157.1	ncRNA:20   AGUUGUGUUGGUUGGUUUUU   1   *|||*|=||||||||||||= targets:440   GCAAAAUAACCAACCAAAAG   459 Target Full Sequence	3.0	Glycine max clone CDS120 PhoD-like phosphatase (Hs1) mRNA, Hs1-1 allele, complete cds	NA	coding protein	psRNATarget
KR106152.1	ncRNA:20   AGUUGUGUUGGUUGGUUUUU   1   *|||*|=||||||||||||= targets:440   GCAAAAUAACCAACCAAAAG   459 Target Full Sequence	3.0	Glycine max clone CDS44 PhoD-like phosphatase (Hs1) mRNA, Hs1-1 allele, complete cds	NA	coding protein	psRNATarget
KR106148.1	ncRNA:20   AGUUGUGUUGGUUGGUUUUU   1   *|||*|=||||||||||||= targets:440   GCAAAAUAACCAACCAAAAG   459 Target Full Sequence	3.0	Glycine max clone CDS9 PhoD-like phosphatase (Hs1) mRNA, Hs1-1 allele, complete cds	NA	coding protein	psRNATarget
KR106153.1	ncRNA:20   AGUUGUGUUGGUUGGUUUUU   1   *|||*|=||||||||||||= targets:440   GCAAAAUAACCAACCAAAAG   459 Target Full Sequence	3.0	Glycine max clone CDS46 PhoD-like phosphatase (Hs1) mRNA, Hs1-1 allele, complete cds	NA	coding protein	psRNATarget