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BaseInfo

ncRNA ID	novel_gma_miR3542
Species	Glycine max
Class	miRNA
Genome position	Chr5:9763983-9764091 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451674
Length	21
Mature sequence(if miRNA)	1 - GACAAAAUUUAGAUGCAGUUC - 21
Stem-loop(if miRNA)	--  C              G    --UAAAU     -------     --U        C   GA AAAAUUUAGAUGCA UUCU       ACUUU       UGGUG   UUUUUAAU A   || |||||||||||||| ||||       |||||       |||||   ||||||||   CU UUUUAAAUCUACGU AAGA       UGGAA       ACCAU   GAGGGUUA A AU  A              G    UAACGUU     AUAAUAC     UUU        A
Stem-loop sequence	GACAAAAUUUAGAUGCAGUUCUUAAAUACUUUUGGUGUUUUUUAAUCAAAAUUGGGAGUUUUACCACAUAAUAAAGGUUUGCAAUAGAAGUGCAUCUAAAUUUUAUCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JN201532.1	ncRNA:21   CUUGACGUAGAUUUAAAACAG   1   *|||||||||||||||||||= targets:266   AAACUGCAUCUAAAUUUUGUU   286 Target Full Sequence	1.0	Glycine max clone Gm4-2 mRNA sequence	NA	coding protein	psRNATarget
XM_003519237.3	ncRNA:21   CUUGACGUAGAUUUAAAACAG   1   *|||||=|||||||||||||| targets:1825   AAACUGUAUCUAAAUUUUGUC   1845 Target Full Sequence	1.0	PREDICTED: Glycine max tyrosine--tRNA ligase, chloroplastic/mitochondrial-like (LOC100813016), mRNA	tyrosine--tRNA ligase, chloroplastic/mitochondrial-like(LOC100813016)	coding protein	psRNATarget
XM_003540810.3	ncRNA:21   CUUGACGUAGAUUUAAAACAG   1   ||||||=||||||=||||||| targets:3324   GAACUGUAUCUAAGUUUUGUC   3344 Target Full Sequence	2.5	PREDICTED: Glycine max formin-like protein 3 (LOC100816477), mRNA	formin-like protein 3(LOC100816477)	coding protein	psRNATarget
XM_014776818.1	ncRNA:21   CUUGACGUAGAUUUAAAACAG   1   ||||||=||||||=||||||| targets:3435   GAACUGUAUCUAAGUUUUGUC   3455 Target Full Sequence	2.5	PREDICTED: Glycine max formin-like protein 3 (LOC100780844), mRNA	formin-like protein 3(LOC100780844)	coding protein	psRNATarget
XM_003553310.3	ncRNA:21   CUUGACGUAGAUUUAAAACAG   1   *|||||=||||||=||||||| targets:2090   UAACUGUAUCUAAGUUUUGUC   2110 Target Full Sequence	2.5	PREDICTED: Glycine max probable arabinosyltransferase ARAD1 (LOC100793373), mRNA	probable arabinosyltransferase ARAD1(LOC100793373)	coding protein	psRNATarget
XM_006585935.2	ncRNA:21   CUUGACGUAGAUUUAAAACAG   1   ||||||*||||||=||||||| targets:359   GAACUGGAUCUAAGUUUUGUC   379 Target Full Sequence	2.5	PREDICTED: Glycine max mucin-21-like (LOC100790656), transcript variant X3, mRNA	mucin-21-like(LOC100790656)	coding protein	psRNATarget
XM_006585934.2	ncRNA:21   CUUGACGUAGAUUUAAAACAG   1   ||||||*||||||=||||||| targets:359   GAACUGGAUCUAAGUUUUGUC   379 Target Full Sequence	2.5	PREDICTED: Glycine max mucin-21-like (LOC100790656), transcript variant X2, mRNA	mucin-21-like(LOC100790656)	coding protein	psRNATarget
BT095961.1	ncRNA:21   CUUGACGUAGAUUUAAAACAG   1   *||||||||||||=||||||* targets:634   AAACUGCAUCUAAGUUUUGUA   654 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-15G2 unknown mRNA	NA	coding protein	psRNATarget
XM_003522635.3	ncRNA:21   CUUGACGUAGAUUUAAAACAG   1   *||||||||||||=||||||* targets:721   AAACUGCAUCUAAGUUUUGUA   741 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100798503 (LOC100798503), mRNA	uncharacterized LOC100798503(LOC100798503)	coding protein	psRNATarget
BT098239.1	ncRNA:21   CUUGACGUAGAUUUAAAACAG   1   *||||||||||||||||*||= targets:298   AAACUGCAUCUAAAUUUCGUU   318 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-12O15 unknown mRNA	NA	coding protein	psRNATarget
JN201531.1	ncRNA:21   CUUGACGUAGAUUUAAAACAG   1   *||||||||||||||||*||= targets:316   AAACUGCAUCUAAAUUUCGUU   336 Target Full Sequence	2.5	Glycine max clone Gm4-1 mRNA sequence	NA	coding protein	psRNATarget
XM_003534311.3	ncRNA:21   CUUGACGUAGAUUUAAAACAG   1   *|||||=||||||||*||||| targets:2065   AAACUGUAUCUAAAUCUUGUC   2085 Target Full Sequence	2.5	PREDICTED: Glycine max amidophosphoribosyltransferase, chloroplastic-like (LOC100791919), mRNA	amidophosphoribosyltransferase, chloroplastic-like(LOC100791919)	coding protein	psRNATarget