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BaseInfo

ncRNA ID novel_gma_miR3533
Species Glycine max
Class miRNA
Genome position Chr11:506442-506512 [+]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 20
Mature sequence(if miRNA) 52 - UUAAAUUUUUGGCUAAAGGA - 71
Stem-loop(if miRNA) -   A         UAUUG       -    -GA  G
 CUU UGGCCAGAA     UGAAAAG AAAG   AG G
 ||| |||||||||     ||||||| ||||   ||
 GGA AUCGGUUUU     AUUUUUU UUUU   UU A
A   A         --UAA       A    AUG  A
Stem-loop sequence CUUAUGGCCAGAAUAUUGUGAAAAGAAAGGAAGGGAAUUGUAUUUUAUUUUUUAAAUUUUUGGCUAAAGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003541977.3
ncRNA:20   AGGAAAUCGGUUUUUAAAUU   1
  *|||||*|||*|||||||||
targets:86   CCCUUUCGCCCAAAAUUUAA   105

2.5 PREDICTED: Glycine max uncharacterized LOC100787251 (LOC100787251), mRNA uncharacterized LOC100787251(LOC100787251) coding protein psRNATarget
XM_006580058.2
ncRNA:20   AGGAAAUCGGUUUUUAAAUU   1
  |**||||||||||||||||*
targets:1798   UAGUUUAGCCAAAAAUUUAU   1817

3.0 PREDICTED: Glycine max glutamate-rich WD repeat-containing protein 1 (LOC100799936), mRNA glutamate-rich WD repeat-containing protein 1(LOC100799936) coding protein psRNATarget