Search result

BaseInfo

ncRNA ID	novel_gma_miR3524
Species	Glycine max
Class	miRNA
Genome position	Chr3:34266856-34267059 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451674
Length	21
Mature sequence(if miRNA)	1 - CAAUUGGACGUUGACCAUUAG - 21
Stem-loop(if miRNA)	--C      A        A                          G   C         A                       -AAA AUGAAAUGCAUUGU    AAUUGG CGUUGACC UUAGCAAGUAAUGUUGAUUGUCAUGU UCA GUUCUUAUU GAUGAUGACUGUCACGUGUCAUG    G              U    |||||| |||||||| |||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||    |              G    UUAACC GCAACUGG AAUCGUUCAUUACAACUGACAGUACA AGU CAAGAAUAA CUAUUAUUGAUAGUGCACAGUAC    C              U GUA      C        C                          A   A         C                       AAGA CAAUUAGUUACUUU
Stem-loop sequence	CAAUUGGACGUUGACCAUUAGCAAGUAAUGUUGAUUGUCAUGUGUCACGUUCUUAUUAGAUGAUGACUGUCACGUGUCAUGAAAGAUGAAAUGCAUUGUUGUUUUCAUUGAUUAACCAGAACAUGACACGUGAUAGUUAUUAUCCAAUAAGAACAUGAAACAUGACAGUCAACAUUACUUGCUAACGGUCAACGCCCAAUUAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006602607.2	ncRNA:21   GAUUACCAGUUGCAGGUUAAC   1   ||||*|||||||||||||||| targets:706   CUAACGGUCAACGUCCAAUUG   726 Target Full Sequence	1.0	PREDICTED: Glycine max transcription factor TGA7-like (LOC100794752), mRNA	transcription factor TGA7-like(LOC100794752)	coding protein	psRNATarget
XM_003516413.1	ncRNA:21   GAUUACCAGUUGCAGGUUAAC   1   =|||*|||||||||=|||||| targets:452   UUAACGGUCAACGUUCAAUUG   472 Target Full Sequence	2.5	PREDICTED: Glycine max dehydration-responsive element-binding protein 3-like (LOC100786075), mRNA	dehydration-responsive element-binding protein 3-like(LOC100786075)	coding protein	psRNATarget
XM_006605785.2	ncRNA:21   GAUUACCAGUUGCAGGUUAAC   1   =|||*|||||||||=|||||| targets:1639   UUAACGGUCAACGUUCAAUUG   1659 Target Full Sequence	2.5	PREDICTED: Glycine max protein DEHYDRATION-INDUCED 19 homolog 4-like (LOC102669504), mRNA	protein DEHYDRATION-INDUCED 19 homolog 4-like(LOC102669504)	coding protein	psRNATarget
LQ242575.1	ncRNA:21   GAUUACCAGUUGCAGGUUAAC   1   *|||*|||||||*|||||||| targets:216   NUAACGGUCAACAUCCAAUUG   236 Target Full Sequence	2.5	Sequence 8570 from Patent EP2985353	NA	coding protein	psRNATarget
HI410445.1	ncRNA:21   GAUUACCAGUUGCAGGUUAAC   1   *|||*|||||||*|||||||| targets:216   NUAACGGUCAACAUCCAAUUG   236 Target Full Sequence	2.5	Sequence 8570 from Patent EP2074227	NA	coding protein	psRNATarget
JB170906.1	ncRNA:21   GAUUACCAGUUGCAGGUUAAC   1   *|||*|||||||*|||||||| targets:216   NUAACGGUCAACAUCCAAUUG   236 Target Full Sequence	2.5	Sequence 8570 from Patent EP2559767	NA	coding protein	psRNATarget