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BaseInfo

ncRNA ID novel_gma_miR3521
Species Glycine max
Class miRNA
Genome position Chr3:26683476-26683581 [-]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 21
Mature sequence(if miRNA) 1 - UACAUCAAUGUGGAAUUUUUC - 21
Stem-loop(if miRNA) -AAAAUG     -CCC      ------------   A -      G     UUUCUUG
       UCCAC    AUGUAA            GGA C GUCUUU AGCUA       U
       |||||    ||||||            ||| | |||||| |||||       U
       AGGUG    UACAUU            CCU G CAGGAA UCGGU       C
CUUUUUA     UAAC      UUGUAUUUUAUA   C A      G     CUUUUUA
Stem-loop sequence AAAAUGUCCACCCCAUGUAAGGAACGUCUUUGAGCUAUUUCUUGUUCAUUUUUCUGGCUGAAGGACAGCUCCAUAUUUUAUGUUUUACAUCAAUGUGGAAUUUUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014772735.1
ncRNA:21   CUUUUUAAGGUGUAACUACAU   1
  *||||||||||||||||||*|
targets:606   UAAAAAUUCCACAUUGAUGAA   626

1.5 PREDICTED: Glycine max protein FAR1-RELATED SEQUENCE 3-like (LOC100786516), transcript variant X2, mRNA protein FAR1-RELATED SEQUENCE 3-like(LOC100786516) coding protein psRNATarget
XM_006605569.2
ncRNA:21   CUUUUUAAGGUGUAACUACAU   1
  *||||||||||||||||||*|
targets:1103   UAAAAAUUCCACAUUGAUGAA   1123

1.5 PREDICTED: Glycine max protein FAR1-RELATED SEQUENCE 3-like (LOC100786516), transcript variant X1, mRNA protein FAR1-RELATED SEQUENCE 3-like(LOC100786516) coding protein psRNATarget
XM_006605570.2
ncRNA:21   CUUUUUAAGGUGUAACUACAU   1
  *||||||||||||||||||*|
targets:1105   UAAAAAUUCCACAUUGAUGAA   1125

1.5 PREDICTED: Glycine max protein FAR1-RELATED SEQUENCE 3-like (LOC100786516), transcript variant X3, mRNA protein FAR1-RELATED SEQUENCE 3-like(LOC100786516) coding protein psRNATarget