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BaseInfo

ncRNA ID novel_gma_miR3506
Species Glycine max
Class miRNA
Genome position Chr2:45650668-45650857 [+]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 21
Mature sequence(if miRNA) 1 - GACAAAAUUUAGAUGCAGUUC - 21
Stem-loop(if miRNA) GAC                 C   U                      C  U    -      C      C       - C    U   UAUUU  U G
   AAAAUUUAGAUGCAGUU UGU GGUGCUUUUGGUGUUGUUCUCU AU AGAA UUGAAG UUCACU UGGUAAU C UGCA UGA     AG G A
   ||||||||||||||||| ||| |||||||||||||||||||||| || |||| |||||| |||||| ||||||| | |||| |||     || |
   UUUUGAAUCUAUGUCAA GUA CCACGAAAACCACAAUAGGAGG UA UCUU AACUUC AAGUGA GCCAUUA G ACGU AUU     UC C A
UCC                 C   U                      C  U    U      A      A       A C    U   -----  - A
Stem-loop sequence GACAAAAUUUAGAUGCAGUUCUGUUGGUGCUUUUGGUGUUGUUCUCUCAUUAGAAUUGAAGCUUCACUCUGGUAAUCCUGCAUUGAUAUUUAGUGGAAACCUUUAUUGCACGAAUUACCGAAGUGAAACUUCAAUUUCUUAUCGGAGGAUAACACCAAAAGCACCUAUGCAACUGUAUCUAAGUUUUCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JN201532.1
ncRNA:21   CUUGACGUAGAUUUAAAACAG   1
  *|||||||||||||||||||=
targets:266   AAACUGCAUCUAAAUUUUGUU   286

1.0 Glycine max clone Gm4-2 mRNA sequence NA coding protein psRNATarget
XM_003519237.3
ncRNA:21   CUUGACGUAGAUUUAAAACAG   1
  *|||||=||||||||||||||
targets:1825   AAACUGUAUCUAAAUUUUGUC   1845

1.0 PREDICTED: Glycine max tyrosine--tRNA ligase, chloroplastic/mitochondrial-like (LOC100813016), mRNA tyrosine--tRNA ligase, chloroplastic/mitochondrial-like(LOC100813016) coding protein psRNATarget
XM_003540810.3
ncRNA:21   CUUGACGUAGAUUUAAAACAG   1
  ||||||=||||||=|||||||
targets:3324   GAACUGUAUCUAAGUUUUGUC   3344

2.5 PREDICTED: Glycine max formin-like protein 3 (LOC100816477), mRNA formin-like protein 3(LOC100816477) coding protein psRNATarget
XM_014776818.1
ncRNA:21   CUUGACGUAGAUUUAAAACAG   1
  ||||||=||||||=|||||||
targets:3435   GAACUGUAUCUAAGUUUUGUC   3455

2.5 PREDICTED: Glycine max formin-like protein 3 (LOC100780844), mRNA formin-like protein 3(LOC100780844) coding protein psRNATarget
XM_003553310.3
ncRNA:21   CUUGACGUAGAUUUAAAACAG   1
  *|||||=||||||=|||||||
targets:2090   UAACUGUAUCUAAGUUUUGUC   2110

2.5 PREDICTED: Glycine max probable arabinosyltransferase ARAD1 (LOC100793373), mRNA probable arabinosyltransferase ARAD1(LOC100793373) coding protein psRNATarget
XM_006585935.2
ncRNA:21   CUUGACGUAGAUUUAAAACAG   1
  ||||||*||||||=|||||||
targets:359   GAACUGGAUCUAAGUUUUGUC   379

2.5 PREDICTED: Glycine max mucin-21-like (LOC100790656), transcript variant X3, mRNA mucin-21-like(LOC100790656) coding protein psRNATarget
XM_006585934.2
ncRNA:21   CUUGACGUAGAUUUAAAACAG   1
  ||||||*||||||=|||||||
targets:359   GAACUGGAUCUAAGUUUUGUC   379

2.5 PREDICTED: Glycine max mucin-21-like (LOC100790656), transcript variant X2, mRNA mucin-21-like(LOC100790656) coding protein psRNATarget
BT095961.1
ncRNA:21   CUUGACGUAGAUUUAAAACAG   1
  *||||||||||||=||||||*
targets:634   AAACUGCAUCUAAGUUUUGUA   654

2.5 Soybean clone JCVI-FLGm-15G2 unknown mRNA NA coding protein psRNATarget
XM_003522635.3
ncRNA:21   CUUGACGUAGAUUUAAAACAG   1
  *||||||||||||=||||||*
targets:721   AAACUGCAUCUAAGUUUUGUA   741

2.5 PREDICTED: Glycine max uncharacterized LOC100798503 (LOC100798503), mRNA uncharacterized LOC100798503(LOC100798503) coding protein psRNATarget
BT098239.1
ncRNA:21   CUUGACGUAGAUUUAAAACAG   1
  *||||||||||||||||*||=
targets:298   AAACUGCAUCUAAAUUUCGUU   318

2.5 Soybean clone JCVI-FLGm-12O15 unknown mRNA NA coding protein psRNATarget
JN201531.1
ncRNA:21   CUUGACGUAGAUUUAAAACAG   1
  *||||||||||||||||*||=
targets:316   AAACUGCAUCUAAAUUUCGUU   336

2.5 Glycine max clone Gm4-1 mRNA sequence NA coding protein psRNATarget
XM_003534311.3
ncRNA:21   CUUGACGUAGAUUUAAAACAG   1
  *|||||=||||||||*|||||
targets:2065   AAACUGUAUCUAAAUCUUGUC   2085

2.5 PREDICTED: Glycine max amidophosphoribosyltransferase, chloroplastic-like (LOC100791919), mRNA amidophosphoribosyltransferase, chloroplastic-like(LOC100791919) coding protein psRNATarget
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